Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 3.3e-181 638.3 328 100.0
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 7.0e-155 550.8 331 85.2
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.0e-153 547.0 331 85.5
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.7e-151 538.9 331 85.2
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 6.4e-116 421.4 335 65.7
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.6e-114 416.8 335 66.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.3e-113 413.7 333 64.6
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 6.6e-113 411.4 335 64.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.9e-112 409.8 330 64.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.3e-112 408.7 335 64.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.3e-112 408.7 336 64.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 5.6e-112 408.3 334 65.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 3.6e-111 405.6 335 61.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.1e-110 404.1 336 65.2
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.1e-110 402.5 335 63.0
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.0e-109 399.8 336 62.8
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.0e-109 399.8 335 62.7
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 5.8e-109 398.3 333 63.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.3e-108 397.1 334 62.3
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.2e-108 396.4 330 64.2
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.4e-108 394.8 335 61.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 8.4e-108 394.4 328 63.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.4e-107 393.7 334 60.5
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.9e-107 393.3 335 61.2
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 5.4e-107 391.7 333 60.4
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.1e-106 389.8 330 62.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.7e-106 389.4 335 60.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.5e-106 389.0 334 62.0
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.6e-106 388.7 330 61.5
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.0e-105 387.5 332 62.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 3.0e-105 386.0 333 60.4
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 5.1e-105 385.2 336 61.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 8.6e-105 384.4 335 61.2
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.5e-104 383.6 221 86.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.5e-104 383.6 335 61.5
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 7.3e-104 381.3 334 59.9
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 7.3e-104 381.3 329 62.9
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.4e-102 377.1 335 59.4
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.1e-102 375.9 333 60.4
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.5e-101 373.6 335 60.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.6e-101 372.9 336 60.4
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.6e-101 371.3 339 60.2
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.8e-100 369.0 335 59.4
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.8e-100 369.0 336 59.2
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.9e-100 368.6 339 60.2
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-99 367.5 335 59.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-99 367.5 335 59.1
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.1e-99 367.5 335 60.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.9e-99 366.7 387 53.7
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 3.2e-99 365.9 331 58.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-99 365.5 335 58.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.4e-99 365.2 335 55.8
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.1e-99 364.8 330 60.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.2e-98 364.0 340 58.2
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.6e-98 363.6 334 60.5
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.6e-98 363.6 335 55.5
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.8e-98 361.3 328 59.5
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 7.8e-98 361.3 337 60.2
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 8.7e-97 357.8 341 58.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-96 356.7 330 60.9
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.9e-96 356.7 343 58.9
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.3e-96 355.9 337 58.5
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.6e-96 355.1 332 55.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.6e-95 352.4 335 58.5
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.6e-95 352.4 334 56.6
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.8e-95 352.1 335 54.9
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.3e-94 348.6 341 56.3
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 5.3e-94 348.6 338 57.7
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 9.0e-94 347.8 335 54.3
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.6e-93 346.3 320 56.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.4e-93 345.9 368 53.3
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.8e-93 345.1 276 63.4
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 9.9e-93 344.4 337 55.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-92 343.2 342 56.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.9e-92 342.0 338 55.0
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 8.4e-92 341.3 339 54.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.4e-92 341.3 331 57.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.2e-91 339.3 332 54.8
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.2e-90 337.4 332 54.5
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-90 337.4 332 54.5
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.2e-90 337.4 332 54.5
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.6e-90 337.0 337 55.2
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-90 336.7 340 52.9
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.7e-90 336.3 334 55.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.6e-90 335.5 279 61.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 4.6e-90 335.5 350 53.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 4.6e-90 335.5 355 53.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.0e-89 334.3 340 54.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-89 334.3 334 56.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.7e-89 333.6 332 53.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.3e-89 333.2 331 54.1
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.0e-89 332.8 317 56.2
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 5.6e-88 328.6 274 59.1
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 4.8e-87 325.5 339 54.3
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 6.2e-87 325.1 324 54.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 6.2e-87 325.1 337 54.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 4.0e-86 322.4 376 47.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 6.9e-86 321.6 329 52.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 5.8e-85 318.5 275 57.5
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.6e-85 318.2 344 52.0
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 9.9e-85 317.8 324 53.7
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.2e-84 316.6 334 52.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.2e-84 316.6 337 51.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.9e-84 315.5 344 51.5
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 8.4e-84 314.7 339 50.7
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.4e-84 314.7 332 51.8
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.4e-84 314.7 332 51.8
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-83 314.3 344 51.2
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.1e-83 314.3 332 50.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 7.1e-83 311.6 330 51.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 9.3e-83 311.2 332 49.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.2e-82 310.8 332 50.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.7e-82 309.7 338 50.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 3.5e-82 309.3 326 50.9
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 6.0e-82 308.5 338 50.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 7.9e-82 308.1 337 52.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.1e-81 305.4 327 50.8
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 8.7e-81 304.7 328 50.0
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.5e-80 303.1 248 64.9
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 7.4e-80 301.6 340 50.6
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.8e-79 299.7 327 49.8
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.1e-78 297.7 327 51.4
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.5e-77 293.9 331 51.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.2e-76 290.0 369 46.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.9e-76 288.9 309 53.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.4e-76 288.1 307 54.1
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.2e-75 285.8 248 62.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.3e-72 275.8 318 50.3
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 7.4e-72 275.0 343 46.6
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.3e-71 274.2 331 48.0
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.8e-71 273.1 239 56.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.8e-71 272.3 303 50.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.3e-68 264.2 327 46.8
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 4.6e-66 255.8 237 58.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 6.1e-66 255.4 302 51.3
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 5.1e-65 252.3 293 48.8
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.5e-64 250.8 336 47.3
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.6e-61 240.0 258 53.1
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.7e-58 229.9 328 43.9
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 4.4e-56 222.6 329 42.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.4e-56 221.9 209 60.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-55 220.3 159 67.9
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.7e-55 219.5 332 41.6
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.9e-52 209.9 165 66.7
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 9.4e-51 204.9 155 67.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 3.3e-48 196.4 327 42.2
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.7e-47 193.0 204 55.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.8e-47 192.6 204 55.9
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.1e-46 188.3 204 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.6e-45 187.6 229 46.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.5e-44 181.8 185 55.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.3e-40 169.9 138 58.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.4e-38 164.5 175 55.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.3e-36 157.9 135 55.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-35 154.8 123 60.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-34 151.4 147 57.1
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.4e-32 142.9 204 47.1
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 5.7e-32 142.5 146 50.0
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 7.5e-32 142.1 210 43.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.7e-31 141.0 126 57.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.7e-28 131.0 135 54.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 8.8e-25 118.6 97 62.9
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 4.1e-22 109.8 104 51.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 7.0e-22 109.0 219 34.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.0e-13 80.9 141 37.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.6e-13 79.7 89 44.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-12 77.4 138 37.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 6.6e-12 75.9 55 65.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.5e-11 74.7 73 57.5
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 6.2e-10 69.3 244 27.5
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 4.9e-07 59.7 52 61.5


User provided reference genes

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