Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 9.4e-202 707.2 530 100.0
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.3e-107 394.4 608 54.1
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 2.2e-105 387.1 473 63.0
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 2.2e-105 387.1 473 63.0
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 2.0e-95 354.0 551 59.9
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.1e-85 321.6 455 58.9
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 2.9e-62 243.8 300 69.0
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 2.0e-55 221.1 533 42.6
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 3.9e-54 216.9 523 42.6
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 6.2e-52 209.5 583 37.0
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 2.3e-51 207.6 498 36.3
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 2.0e-50 204.5 545 37.8
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 1.4e-48 198.4 557 43.6
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 6.6e-46 189.5 493 38.3
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.1e-45 188.7 554 38.3
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 5.6e-45 186.4 543 32.0
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 7.3e-45 186.0 516 41.3
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 4.9e-41 173.3 538 34.2
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 7.8e-39 166.0 359 40.7
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 6.6e-38 162.9 440 38.0
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 4.3e-37 160.2 546 36.8
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 1.2e-36 158.7 573 33.7
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 2.1e-36 157.9 514 34.2
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 3.6e-36 157.1 518 36.3
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 6.2e-36 156.4 504 35.9
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 1.1e-35 155.6 562 35.8
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 1.1e-35 155.6 570 34.0
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.8e-35 154.8 535 37.4
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.8e-35 154.8 560 35.4
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 3.1e-35 154.1 406 34.7
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 4.0e-35 153.7 535 39.4
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 3.4e-34 150.6 519 34.1
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 6.4e-33 146.4 448 34.6
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.1e-32 145.6 555 33.2
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 1.9e-32 144.8 549 35.3
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 3.2e-32 144.1 585 29.1
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.2e-31 142.1 571 32.9
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 1.2e-31 142.1 535 38.5
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 6.0e-31 139.8 505 35.2
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 7.8e-31 139.4 332 34.3
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.0e-30 139.0 511 32.3
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 2.3e-30 137.9 493 33.5
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.3e-30 137.9 508 39.4
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 6.6e-30 136.3 494 33.6
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.1e-29 135.6 410 39.3
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 5.6e-29 133.3 308 35.4
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 9.6e-29 132.5 301 41.5
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 1.2e-28 132.1 564 41.5
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 1.6e-28 131.7 394 39.6
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.4e-27 128.6 537 34.1
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.8e-27 128.3 563 34.5
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.1e-27 127.5 342 32.2
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 4.0e-27 127.1 468 35.7
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 5.2e-27 126.7 421 38.0
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 5.2e-27 126.7 586 30.7
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 2.6e-26 124.4 568 30.6
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 3.4e-26 124.0 275 32.4
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 4.4e-26 123.6 440 37.0
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 9.9e-26 122.5 514 37.2
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 1.3e-25 122.1 592 29.9
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.7e-25 121.7 563 30.0
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 3.8e-25 120.6 566 31.6
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 5.4e-24 116.7 524 33.4
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 1.2e-23 115.5 471 31.8
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.6e-23 115.2 409 32.0
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 7.8e-23 112.8 296 32.4
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.0e-22 112.5 574 38.0
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 1.3e-22 112.1 427 34.7
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.3e-22 111.3 551 31.8
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 3.0e-22 110.9 532 35.5
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 3.9e-22 110.5 555 32.8
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 8.7e-22 109.4 567 37.2
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.1e-21 109.0 432 34.7
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 1.1e-21 109.0 530 34.5
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 2.5e-21 107.8 399 38.1
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.1e-20 104.8 556 30.0
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 2.8e-20 104.4 492 37.8
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 2.8e-20 104.4 344 29.7
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 3.6e-20 104.0 277 31.4
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 8.1e-20 102.8 336 44.0
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 8.1e-20 102.8 375 32.8
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.1e-19 102.4 450 36.9
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.4e-19 102.1 437 33.6
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 1.4e-19 102.1 306 41.2
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.4e-19 102.1 383 35.0
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 1.4e-19 102.1 346 29.8
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 1.8e-19 101.7 344 29.7
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 2.4e-19 101.3 297 36.7
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 3.1e-19 100.9 338 43.2
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 4.0e-19 100.5 303 29.7
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 1.2e-18 99.0 596 28.2
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 1.2e-18 99.0 353 27.8
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.5e-18 98.6 519 34.5
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 5.8e-18 96.7 530 34.5
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 9.9e-18 95.9 382 37.4
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 9.9e-18 95.9 588 30.6
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.7e-17 95.1 392 34.4
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 8.4e-17 92.8 333 41.7
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.1e-16 92.4 547 29.6
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.1e-16 92.4 409 43.8
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 5.4e-16 90.1 377 39.5
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 7.1e-16 89.7 574 32.9
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 9.3e-16 89.4 559 34.5
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 1.6e-15 88.6 303 38.3
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 2.1e-15 88.2 377 35.5
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 2.1e-15 88.2 350 27.4
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 4.6e-15 87.0 334 41.0
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 4.6e-15 87.0 334 41.0
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 1.0e-14 85.9 333 41.1
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 1.0e-14 85.9 349 26.4
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 2.3e-14 84.7 355 40.6
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 3.0e-14 84.3 560 31.8
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.0e-14 84.3 559 31.7
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 3.0e-14 84.3 520 33.8
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 5.1e-14 83.6 387 31.3
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 5.1e-14 83.6 563 34.8
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 6.7e-14 83.2 481 25.4
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 8.7e-14 82.8 536 29.7
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 1.1e-13 82.4 406 31.5
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.5e-13 82.0 295 32.2
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 4.3e-13 80.5 574 27.2
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.6e-13 79.3 559 35.6
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 9.6e-13 79.3 256 27.7
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 1.3e-12 79.0 355 25.6
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 1.3e-12 79.0 304 34.2
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.1e-12 78.2 383 32.4
CDE10G1056 Ceratophyllum demersum HOM05D002657 ORTHO05D004838 2.8e-12 77.8 122 45.1
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 8.1e-12 76.3 294 39.8
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 1.8e-11 75.1 420 28.6
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 4.0e-11 73.9 556 31.3
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 6.9e-11 73.2 245 26.9
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 2.0e-10 71.6 554 33.0
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 2.6e-10 71.2 397 25.2
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 7.6e-10 69.7 558 32.4
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.2e-09 68.2 505 33.1
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 6.4e-09 66.6 552 29.5
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 1.1e-08 65.9 222 31.5
Migut.F00936 Erythranthe guttata HOM05D002657 ORTHO05D003059 1.9e-08 65.1 419 29.1
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.9e-08 65.1 288 34.0
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 4.2e-08 63.9 371 29.6
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 5.5e-08 63.5 572 29.4
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 9.3e-08 62.8 416 23.6
Solyc06g072730.4 Solanum lycopersicum HOM05D002657 ORTHO05D003059 9.3e-08 62.8 214 24.3
Oeu038085.1 Olea europaea HOM05D002657 ORTHO05D003059 3.5e-07 60.8 215 35.8
CiPaw.05G214700 Carya illinoinensis HOM05D002657 ORTHO05D003059 4.6e-07 60.5 397 29.7
Os02g0572600 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 4.6e-07 60.5 308 31.2
Atru.chr12.1915 Acer truncatum HOM05D002657 ORTHO05D003059 6.0e-07 60.1 397 29.2
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 6.0e-07 60.1 412 28.6
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 7.9e-07 59.7 459 26.8
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 7.9e-07 59.7 288 33.3
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 1.0e-06 59.3 164 27.4
SalBow2G3352 Salvia bowleyana HOM05D002657 ORTHO05D003059 1.0e-06 59.3 412 28.9
Rhsim03G0223300 Rhododendron simsii HOM05D002657 ORTHO05D003059 1.3e-06 58.9 205 37.1
HPP92_016777 Vanilla planifolia HOM05D004950 ORTHO05D004838 1.3e-06 58.9 156 34.6
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 1.8e-06 58.5 360 26.9
Gohir.D03G040150 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.3e-06 58.2 558 33.9
ATR0684G198 Amborella trichopoda HOM05D002657 ORTHO05D003059 3.0e-06 57.8 192 35.4
Prupe.2G328200 Prunus persica HOM05D002657 ORTHO05D003059 3.9e-06 57.4 417 29.5
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 6.7e-06 56.6 288 32.6
Gohir.A11G303100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 6.7e-06 56.6 416 25.7
Sopen06g029110 Solanum pennellii HOM05D002657 ORTHO05D003059 6.7e-06 56.6 214 29.0


User provided reference genes

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