Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 0.0e+00 1459.5 742 100.0
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 0.0e+00 1216.4 746 85.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 0.0e+00 1184.1 747 83.5
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 0.0e+00 1184.1 747 83.9
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.3e-228 797.0 810 56.3
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.2e-225 786.2 761 58.7
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.4e-216 756.9 781 57.6
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.0e-214 750.7 764 56.7
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.2e-212 741.1 764 57.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.2e-210 737.3 764 56.8
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.2e-210 737.3 756 56.7
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.6e-210 736.1 774 56.8
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 8.5e-209 731.1 777 55.1
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 4.2e-208 728.8 774 55.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 7.2e-208 728.0 764 55.4
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.4e-208 727.6 772 56.2
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 6.1e-207 724.9 729 57.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.3e-206 723.0 785 53.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.2e-206 721.8 772 56.1
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.7e-206 721.5 760 56.7
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 7.5e-205 718.0 774 54.3
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.8e-204 715.3 774 54.5
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.4e-203 713.0 805 53.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.4e-203 713.0 784 55.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 9.1e-203 711.1 764 53.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 5.0e-201 705.3 770 54.8
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 3.6e-199 699.1 764 54.3
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.0e-198 696.0 816 52.1
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.5e-197 693.7 783 53.9
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 9.8e-197 691.0 773 53.2
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.2e-196 689.9 768 53.3
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 7.7e-194 681.4 663 56.7
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.7e-193 680.2 765 53.6
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.9e-193 679.5 754 54.9
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.1e-192 677.6 597 61.1
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.5e-192 677.2 710 54.6
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 6.1e-191 671.8 721 54.0
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 8.0e-191 671.4 719 55.2
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 2.0e-189 666.8 727 53.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 7.5e-189 664.8 669 55.3
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.7e-186 656.4 762 52.5
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 5.9e-186 655.2 694 53.7
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 7.8e-186 654.8 605 58.3
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.0e-185 654.4 770 51.4
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.5e-184 650.6 793 50.6
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 4.7e-183 645.6 765 51.0
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 8.0e-183 644.8 695 54.2
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-182 644.0 574 59.9
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.0e-181 640.2 772 50.1
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.8e-181 638.6 755 52.2
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.7e-180 637.1 747 51.0
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 3.7e-180 636.0 770 50.5
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.9e-179 633.6 758 52.1
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.0e-177 627.9 769 50.7
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 3.0e-177 626.3 817 49.3
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 6.6e-177 625.2 775 49.8
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.3e-176 621.7 771 50.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.1e-174 617.8 737 49.4
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.3e-174 616.7 657 55.6
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 6.8e-174 615.1 760 50.7
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 2.6e-173 613.2 781 49.2
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 4.4e-173 612.5 774 49.1
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 5.8e-173 612.1 760 51.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.7e-172 610.5 745 50.3
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.9e-171 607.1 775 48.8
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 5.4e-171 605.5 760 51.1
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 7.8e-170 601.7 781 49.3
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.7e-169 600.5 781 48.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.3e-168 595.9 787 49.2
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 7.3e-168 595.1 642 52.8
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-166 591.3 730 49.5
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.4e-166 590.9 782 48.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 1.8e-166 590.5 776 48.3
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.0e-165 587.0 786 48.2
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 3.4e-165 586.3 728 49.5
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 7.5e-165 585.1 681 49.9
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 2.2e-164 583.6 777 47.1
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.2e-162 577.8 775 46.1
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 3.5e-162 576.2 785 47.3
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 6.6e-161 572.0 641 51.6
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.5e-160 570.9 794 47.7
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 4.7e-159 565.8 821 46.3
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.4e-158 564.3 774 47.2
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 8.9e-158 561.6 784 45.9
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 2.6e-157 560.1 769 46.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.4e-157 559.3 669 49.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 9.9e-157 558.1 780 45.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.3e-156 557.8 471 61.1
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 3.8e-156 556.2 781 46.4
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.8e-150 537.3 783 44.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 3.9e-145 519.6 789 45.6
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.6e-138 496.1 416 62.0
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 3.2e-131 473.4 483 55.7
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.0e-130 469.2 566 49.8
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.5e-128 464.5 677 43.4
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 4.6e-122 443.0 608 44.6
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.1e-110 403.7 554 45.7
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.1e-110 403.7 801 37.3
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 6.9e-110 402.5 714 41.3
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.4e-105 388.3 656 39.3
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 5.9e-101 372.9 583 42.9
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 9.4e-99 365.5 739 36.1
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 3.1e-94 350.5 422 47.2
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.6e-85 321.6 487 43.7
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.4e-78 297.7 801 31.0
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 2.8e-66 257.7 648 33.2
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.7e-61 241.1 453 39.1
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 2.3e-60 238.0 270 50.4
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.3e-51 207.2 224 56.2
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 9.9e-48 196.1 318 41.8
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.6e-42 178.7 241 45.2
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.1e-34 151.8 256 47.3
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 9.9e-32 142.9 198 43.9
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.9e-31 141.4 559 23.1
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-30 139.4 230 43.5
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 6.0e-29 133.7 205 47.3
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 3.6e-26 124.4 634 22.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 2.2e-23 115.2 147 51.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.2e-23 115.2 189 40.7
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 4.6e-21 107.5 93 68.8
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.0e-20 106.3 94 56.4
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.6e-13 82.4 110 47.3
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 7.9e-13 80.1 112 47.3
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 4.3e-11 74.3 175 30.3
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 9.6e-11 73.2 96 50.0
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 8.2e-10 70.1 77 53.2
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.5e-06 58.5 104 35.6
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.5e-06 58.5 102 27.5
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 3.2e-06 58.2 102 26.5
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 3.2e-06 58.2 102 26.5
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 5.5e-06 57.4 69 33.3
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 88 33.0
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.2e-06 57.0 67 34.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.2e-06 57.0 66 34.8
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 7.2e-06 57.0 88 31.8


User provided reference genes

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