Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 9.7e-81 303.5 164 100.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.2e-49 200.3 185 69.2
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.9e-45 185.7 190 63.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 4.3e-44 181.8 183 62.8
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 7.5e-41 171.0 183 62.8
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.0e-37 158.3 118 67.8
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.3e-36 155.6 185 53.5
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 4.3e-36 155.2 177 53.7
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 7.3e-36 154.5 137 60.6
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.6e-35 153.3 108 75.9
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.8e-35 152.5 94 81.9
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.8e-35 152.5 105 74.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 3.6e-35 152.1 133 63.9
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 4.7e-35 151.8 101 78.2
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 6.2e-35 151.4 182 50.5
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 8.0e-35 151.0 185 54.6
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.1e-34 150.6 183 50.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.8e-34 149.8 94 81.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.8e-34 149.8 173 53.2
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.3e-34 149.4 94 81.9
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.3e-34 149.4 111 68.5
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.1e-34 149.1 180 50.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 5.2e-34 148.3 181 51.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 5.2e-34 148.3 201 50.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 5.2e-34 148.3 152 55.9
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 5.2e-34 148.3 177 51.4
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 6.8e-34 147.9 103 72.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 8.9e-34 147.5 94 78.7
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.5e-33 146.7 110 69.1
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.5e-33 146.7 182 50.0
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.0e-33 146.4 162 53.1
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 3.4e-33 145.6 177 51.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 4.4e-33 145.2 175 49.7
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 5.8e-33 144.8 118 61.9
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 5.8e-33 144.8 175 49.1
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 9.8e-33 144.1 97 75.3
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 9.8e-33 144.1 182 50.5
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 9.8e-33 144.1 95 74.7
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.8e-33 144.1 182 50.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.3e-32 143.7 97 74.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.7e-32 143.3 180 47.8
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.7e-32 143.3 122 66.4
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.7e-32 143.3 125 62.4
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.2e-32 142.9 183 49.7
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 2.9e-32 142.5 96 74.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 2.9e-32 142.5 96 74.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 2.9e-32 142.5 96 74.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 3.7e-32 142.1 176 52.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 6.4e-32 141.4 95 73.7
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 6.4e-32 141.4 175 51.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 8.3e-32 141.0 182 50.5
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.1e-31 140.6 93 76.3
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.1e-31 140.6 112 66.1
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.1e-31 140.6 112 66.1
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.1e-31 140.6 135 59.3
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.4e-31 140.2 93 77.4
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.4e-31 140.2 92 78.3
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.4e-31 140.2 181 50.3
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-31 139.8 178 50.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.9e-31 139.8 97 73.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.2e-31 139.0 110 67.3
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 5.4e-31 138.3 179 48.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 5.4e-31 138.3 98 72.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 7.0e-31 137.9 184 49.5
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.2e-30 137.1 184 49.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.6e-30 136.7 136 59.6
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.1e-30 136.3 191 48.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.1e-30 136.3 92 73.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.1e-30 136.3 92 73.9
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.1e-30 136.3 93 73.1
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 2.1e-30 136.3 182 48.9
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.1e-30 136.3 97 73.2
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.7e-30 136.0 104 69.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 3.5e-30 135.6 136 55.1
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.5e-30 135.6 182 47.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.6e-30 135.2 178 50.0
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 4.6e-30 135.2 82 82.9
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 6.0e-30 134.8 184 46.7
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 7.8e-30 134.4 105 64.8
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 7.8e-30 134.4 127 55.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 7.8e-30 134.4 94 72.3
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.0e-29 134.0 130 56.9
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.7e-29 133.3 178 48.3
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.3e-29 132.9 197 46.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.3e-29 132.9 92 73.9
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-29 132.9 114 63.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.3e-29 132.9 100 67.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.3e-29 132.9 134 61.9
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 3.0e-29 132.5 197 47.2
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.9e-29 132.1 176 50.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 6.6e-29 131.3 94 72.3
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.5e-28 129.4 106 63.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.3e-28 129.0 146 52.1
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.3e-28 128.6 88 76.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.3e-28 128.6 88 75.0
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.5e-28 127.5 177 45.2
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.2e-27 127.1 96 65.6
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.6e-27 126.7 109 60.6
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.1e-27 126.3 212 44.3
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 2.8e-27 125.9 181 48.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.7e-27 125.2 149 49.7
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 6.2e-27 124.8 92 70.7
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.3e-26 122.9 78 78.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 3.1e-26 122.5 147 49.7
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.0e-25 119.8 77 79.2
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 4.4e-25 118.6 77 76.6
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.2e-24 116.3 82 72.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 4.9e-24 115.2 145 45.5
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.7e-22 109.4 90 61.1
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.3e-21 106.3 72 75.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 6.6e-21 104.8 78 65.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.9e-20 103.2 73 69.9
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.5e-20 102.8 84 60.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.3e-20 101.3 87 57.5
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.8e-18 96.7 84 59.5
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 9.9e-17 90.9 101 48.5
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.4e-15 86.3 58 74.1
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 7.1e-15 84.7 106 49.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-12 77.0 61 68.9
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.9e-12 76.6 140 39.3
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.5e-12 76.3 62 67.7
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.2e-11 73.9 82 40.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.0e-10 68.9 142 40.8
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.2e-09 67.4 42 81.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 9.9e-09 64.3 144 38.9
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.4e-07 58.5 45 64.4
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 7.1e-07 58.2 76 44.7
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 9.3e-07 57.8 39 69.2
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.2e-06 57.4 82 34.1
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 3.5e-06 55.8 133 32.3


User provided reference genes

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