Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 0.0e+00 1175.6 592 100.0
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 1.2e-309 1065.8 592 90.2
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 3.2e-307 1057.7 592 89.4
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 3.5e-274 948.0 592 82.9
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 7.9e-266 920.2 592 78.9
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 8.7e-265 916.8 593 78.4
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 1.9e-264 915.6 596 78.7
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 9.0e-262 906.7 594 76.6
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 3.4e-261 904.8 594 77.4
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 7.6e-261 903.7 593 77.2
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 8.5e-260 900.2 593 77.6
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.4e-259 899.4 594 77.9
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 3.2e-259 898.3 594 76.8
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.6e-258 896.0 592 77.2
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.0e-257 893.3 593 75.9
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.4e-257 892.9 595 76.8
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.8e-257 892.5 594 76.3
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 6.7e-257 890.6 594 76.6
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.3e-256 888.3 594 76.3
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 1.7e-255 885.9 564 80.1
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 8.2e-255 883.6 581 76.9
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.1e-254 883.2 595 76.8
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.4e-254 882.9 608 74.8
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.8e-254 882.5 594 76.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 4.1e-254 881.3 593 73.9
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 2.2e-252 875.5 592 74.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 5.0e-252 874.4 544 79.8
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 8.5e-252 873.6 593 75.0
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.1e-251 873.2 555 77.8
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 1.4e-251 872.8 543 79.6
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 4.2e-251 871.3 490 88.8
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.1e-250 869.0 593 74.0
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 4.7e-250 867.8 595 74.5
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 3.0e-249 865.1 592 74.2
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 3.9e-249 864.8 541 80.6
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 5.1e-249 864.4 596 74.8
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 2.0e-248 862.4 604 73.8
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 9.7e-248 860.1 597 74.2
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.7e-247 859.4 594 72.6
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.2e-247 859.0 594 73.7
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 2.8e-247 858.6 602 73.3
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 3.7e-247 858.2 597 72.9
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.8e-246 855.9 533 79.9
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 5.3e-246 854.4 569 75.4
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 5.3e-246 854.4 590 74.9
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 9.1e-246 853.6 600 72.7
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 9.1e-246 853.6 604 72.7
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-245 852.8 581 75.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 3.4e-245 851.7 607 72.0
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 7.7e-245 850.5 591 72.8
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 7.7e-245 850.5 552 76.1
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.0e-244 850.1 591 73.4
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 1.0e-244 850.1 591 72.9
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 1.7e-244 849.4 595 72.8
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.9e-244 848.6 536 80.0
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 3.8e-244 848.2 594 71.2
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 1.4e-243 846.3 601 72.0
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.4e-243 846.3 591 72.9
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 1.9e-243 845.9 605 72.2
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 5.5e-243 844.3 547 77.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 9.4e-243 843.6 603 72.1
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 1.0e-241 840.1 531 78.7
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 3.0e-241 838.6 582 72.9
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 1.5e-240 836.3 601 72.0
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 1.5e-240 836.3 601 72.0
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 2.0e-240 835.9 549 76.0
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.7e-240 834.3 543 77.2
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 5.7e-240 834.3 593 72.5
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 7.4e-240 833.9 598 72.4
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.2e-239 832.4 547 77.0
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 4.8e-239 831.2 531 77.8
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 4.8e-239 831.2 593 72.3
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.4e-238 829.7 543 77.2
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.8e-238 829.3 524 78.1
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.4e-238 828.9 540 77.8
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.1e-238 828.6 537 76.9
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-237 826.6 574 73.7
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.6e-237 825.5 566 74.4
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 8.5e-236 820.5 599 71.1
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 5.5e-235 817.8 588 71.9
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.3e-228 796.6 528 77.7
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.2e-227 792.0 591 69.4
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.2e-227 791.6 627 67.6
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.4e-225 786.6 535 73.3
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 2.2e-223 779.2 587 68.3
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 1.8e-222 776.2 519 76.7
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 3.5e-221 771.9 522 74.3
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 3.3e-219 765.4 520 72.7
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 1.4e-217 760.0 547 70.6
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.3e-217 759.2 549 71.6
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 3.0e-217 758.8 583 67.8
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 5.2e-217 758.1 591 67.2
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 2.2e-215 752.7 526 71.5
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 2.8e-215 752.3 523 74.8
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 2.8e-215 752.3 461 79.4
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 9.2e-214 747.3 520 71.2
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 8.6e-212 740.7 498 74.1
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.4e-209 733.4 442 81.4
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.8e-201 706.4 496 73.4
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.1e-198 695.3 496 72.0
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 5.4e-198 694.9 595 65.0
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 6.0e-197 691.4 581 63.9
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.5e-195 686.0 518 68.9
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 1.4e-193 680.2 557 62.8
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.3e-188 662.9 508 66.3
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 5.2e-185 651.7 526 63.9
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 6.0e-181 638.3 507 65.1
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 4.0e-177 625.5 384 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 5.4e-166 588.6 448 65.8
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.0e-159 567.8 391 75.2
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 5.0e-119 432.6 346 62.1
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-94 351.3 253 70.0
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.4e-83 313.5 200 77.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-62 243.0 274 47.4
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-55 221.5 208 54.3
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 4.9e-50 203.4 143 70.6
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.0e-47 194.1 141 68.1
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 5.5e-41 173.3 100 79.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 8.7e-39 166.0 102 79.4
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.8e-34 150.6 101 70.3
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 4.2e-25 120.6 175 42.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 2.1e-24 118.2 106 57.5
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 5.7e-22 110.2 74 74.3
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.3e-21 109.0 66 75.8
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 2.2e-21 108.2 76 69.7
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 5.9e-19 100.1 147 44.9
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.3e-18 99.0 63 76.2
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.3e-18 99.0 63 76.2
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 2.5e-17 94.7 66 71.2
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 2.5e-17 94.7 66 71.2
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 8.8e-15 86.3 68 61.8
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.5e-14 85.5 54 77.8
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 7.2e-09 66.6 122 40.2
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.0e-06 58.5 38 71.1


User provided reference genes

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