Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 7.1e-139 497.3 254 100.0
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.4e-115 419.9 254 85.8
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 9.6e-112 407.1 239 87.9
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.5e-109 399.8 239 85.8
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.5e-83 312.8 261 66.3
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 2.4e-78 296.2 246 65.9
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 7.0e-78 294.7 247 66.4
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.6e-74 283.5 236 64.4
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.6e-74 282.3 235 63.8
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 3.6e-74 282.3 232 66.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 3.6e-74 282.3 239 64.4
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 4.7e-74 282.0 235 63.8
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.7e-74 282.0 233 68.2
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.4e-73 280.4 233 63.9
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.8e-73 280.0 235 66.0
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.0e-73 279.3 235 63.4
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 4.0e-73 278.9 243 62.6
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 5.2e-73 278.5 241 62.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.5e-72 276.9 231 64.5
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 3.4e-72 275.8 240 63.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 5.7e-72 275.0 250 61.6
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 4.8e-71 271.9 231 62.3
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 4.8e-71 271.9 262 59.9
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 6.3e-71 271.6 242 63.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.4e-70 270.4 245 61.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.8e-70 270.0 230 64.8
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 5.4e-70 268.5 241 61.0
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 5.4e-70 268.5 246 60.2
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 7.0e-70 268.1 242 59.9
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 9.1e-70 267.7 238 62.2
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.2e-69 267.3 234 62.0
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.6e-69 266.9 247 60.3
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.0e-69 266.5 232 63.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.5e-69 265.8 237 60.3
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 4.5e-69 265.4 242 60.7
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 7.7e-69 264.6 248 59.7
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.0e-68 264.2 241 61.0
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.3e-68 263.8 229 62.9
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.2e-68 263.1 236 61.9
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 3.8e-68 262.3 241 61.4
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 8.5e-68 261.2 241 61.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.9e-67 260.0 231 61.5
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 3.2e-67 259.2 222 64.0
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.2e-67 258.8 257 58.8
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 5.5e-67 258.5 234 59.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 5.5e-67 258.5 234 59.4
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.2e-67 258.1 234 60.7
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 9.4e-67 257.7 215 65.1
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 9.4e-67 257.7 236 58.5
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 9.4e-67 257.7 234 59.4
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 9.4e-67 257.7 238 60.1
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.1e-66 256.5 257 58.4
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.7e-66 256.1 237 59.5
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.7e-66 256.1 234 59.4
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.7e-66 256.1 234 59.4
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 4.7e-66 255.4 246 58.1
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.4e-65 253.8 246 60.2
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.8e-65 253.4 255 56.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.8e-65 253.4 236 56.8
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.8e-65 253.4 233 60.5
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.0e-65 252.7 245 57.6
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 3.0e-65 252.7 228 60.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 5.2e-65 251.9 239 58.6
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 5.2e-65 251.9 234 58.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-64 250.8 246 55.7
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.5e-64 250.4 236 60.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.5e-64 250.4 240 60.4
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 3.4e-64 249.2 236 60.2
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 9.8e-64 247.7 238 60.5
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 3.7e-63 245.7 153 75.2
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 3.7e-63 245.7 247 56.7
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.3e-63 245.0 240 58.8
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.3e-63 245.0 239 57.7
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.4e-62 243.8 238 58.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-62 243.4 240 57.9
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.8e-62 243.4 230 59.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.4e-62 243.0 287 52.6
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.1e-62 242.3 231 60.2
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 5.4e-62 241.9 241 57.7
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.2e-61 240.7 219 62.6
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.0e-61 240.0 235 56.6
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.5e-61 238.8 240 57.1
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.5e-61 238.8 240 57.1
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.0e-60 237.7 261 53.3
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.3e-60 237.3 216 61.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.9e-60 236.1 265 52.8
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 3.8e-60 235.7 206 60.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 6.6e-60 235.0 158 71.5
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.5e-59 233.8 242 57.9
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.5e-59 233.8 231 58.4
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.2e-58 230.7 242 57.0
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.6e-58 230.3 218 61.0
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.6e-58 230.3 231 53.7
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.8e-58 229.6 218 56.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.0e-56 223.4 227 55.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.7e-55 220.3 284 50.7
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.1e-54 215.7 227 56.4
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 4.1e-54 215.7 217 57.1
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.0e-53 213.4 151 68.2
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 7.8e-53 211.5 151 67.5
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 3.9e-52 209.1 133 73.7
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.0e-52 208.8 236 53.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.5e-51 207.2 229 52.4
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 5.6e-51 205.3 152 66.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 5.2e-49 198.7 158 63.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 4.6e-45 185.7 224 51.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.9e-43 180.3 184 50.5
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.4e-41 174.1 142 57.0
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.4e-41 174.1 226 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 3.1e-41 172.9 139 61.2
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.0e-40 170.2 179 48.0
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 9.8e-40 167.9 182 53.8
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.3e-39 167.5 119 68.1
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.7e-39 167.2 236 43.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.4e-38 163.3 170 54.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 9.2e-38 161.4 194 49.0
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.7e-37 159.8 135 57.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.1e-33 147.9 170 50.6
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 7.6e-32 141.7 149 53.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.3e-31 141.0 95 78.9
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 3.0e-28 129.8 65 89.2
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 3.0e-28 129.8 97 70.1
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.8e-25 120.6 129 58.1
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.5e-19 100.9 50 84.0
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.6e-18 97.4 135 36.3
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.4e-17 93.6 73 65.8
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.2e-16 91.3 54 79.6
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.4e-16 89.7 117 46.2
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.9e-15 86.7 105 47.6
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 4.0e-09 66.2 228 29.4
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.2e-08 64.7 129 31.8
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.4e-08 63.2 36 75.0


User provided reference genes

Program Settings