Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 6.3e-91 337.4 171 100.0
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 1.2e-81 306.6 169 89.3
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 5.2e-77 291.2 189 79.9
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 5.9e-73 277.7 168 79.2
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 5.9e-73 277.7 165 80.6
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 1.7e-72 276.2 170 77.6
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 3.9e-72 275.0 165 78.2
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 1.1e-71 273.5 165 78.8
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 5.6e-71 271.2 170 76.5
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 1.6e-70 269.6 170 74.7
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 2.1e-70 269.2 170 75.3
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 4.7e-70 268.1 170 74.7
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.8e-69 266.2 165 77.0
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 4.0e-69 265.0 164 76.2
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 5.2e-69 264.6 169 74.6
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 6.8e-69 264.2 150 89.3
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 1.2e-68 263.5 185 71.9
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 4.4e-68 261.5 171 73.7
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 7.5e-68 260.8 170 74.1
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 9.8e-68 260.4 171 71.3
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 9.8e-68 260.4 171 71.3
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 9.8e-68 260.4 165 75.8
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.7e-67 259.6 172 73.3
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.7e-67 259.6 171 73.1
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 2.2e-67 259.2 165 74.5
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 1.9e-66 256.1 165 72.1
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 5.4e-66 254.6 169 72.2
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 1.2e-65 253.4 165 72.1
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 1.6e-65 253.1 165 71.5
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 2.0e-65 252.7 169 69.8
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 2.0e-65 252.7 167 72.5
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 2.7e-65 252.3 170 70.6
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 3.5e-65 251.9 169 69.2
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 4.6e-65 251.5 168 72.6
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 7.8e-65 250.8 170 71.8
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 7.8e-65 250.8 165 70.9
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 1.0e-64 250.4 165 70.3
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 1.0e-64 250.4 165 70.3
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 1.0e-64 250.4 170 71.8
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 1.0e-64 250.4 165 69.1
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 1.3e-64 250.0 165 70.3
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 1.7e-64 249.6 170 71.8
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 2.3e-64 249.2 165 70.9
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.0e-64 248.8 163 74.8
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 3.0e-64 248.8 170 71.2
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 6.6e-64 247.7 165 68.5
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 8.6e-64 247.3 169 71.6
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.1e-63 246.9 165 69.7
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.5e-63 246.5 170 69.4
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 1.9e-63 246.1 169 70.4
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 1.9e-63 246.1 152 77.6
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 2.5e-63 245.7 170 68.8
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.5e-63 245.7 170 68.8
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 4.3e-63 245.0 170 68.8
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 9.5e-63 243.8 173 70.5
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.6e-62 243.0 169 66.9
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.6e-62 243.0 170 69.4
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 6.2e-62 241.1 165 69.1
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.1e-61 240.4 169 66.3
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 2.3e-61 239.2 158 70.3
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 5.2e-61 238.0 158 70.9
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 1.5e-60 236.5 162 68.5
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 2.6e-60 235.7 168 64.3
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 4.4e-60 235.0 160 70.6
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 1.3e-59 233.4 156 71.2
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 2.2e-59 232.6 152 73.0
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 2.2e-59 232.6 167 66.5
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 2.9e-59 232.3 158 70.9
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 2.9e-59 232.3 138 80.4
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 6.4e-59 231.1 158 70.3
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 6.4e-59 231.1 155 69.0
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 1.2e-57 226.9 166 62.0
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.2e-57 226.9 177 62.7
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 2.7e-57 225.7 155 71.0
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 7.8e-57 224.2 165 69.1
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 7.8e-57 224.2 168 62.5
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 1.1e-53 213.8 152 65.8
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 1.2e-52 210.3 248 48.4
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 1.3e-51 206.8 149 67.1
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.1e-50 203.8 167 62.9
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 1.6e-49 199.9 152 67.8
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 4.6e-49 198.4 119 79.8
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 3.0e-48 195.7 161 55.3
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 6.6e-48 194.5 161 55.9
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.5e-44 183.3 158 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 9.9e-44 180.6 156 52.6
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 3.8e-43 178.7 187 50.3
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 4.2e-42 175.3 157 59.2
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 7.1e-42 174.5 125 64.8
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 1.2e-41 173.7 120 66.7
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 1.2e-41 173.7 158 50.0
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 7.8e-41 171.0 132 59.1
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 7.3e-39 164.5 114 66.7
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 2.1e-38 162.9 167 45.5
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 6.2e-38 161.4 118 67.8
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 1.8e-37 159.8 162 50.0
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 3.1e-37 159.1 131 55.0
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 2.0e-36 156.4 115 65.2
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 2.6e-36 156.0 109 68.8
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 4.9e-35 151.8 97 70.1
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 6.4e-35 151.4 109 67.9
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 4.2e-34 148.7 107 62.6
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 1.2e-33 147.1 107 60.7
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 3.5e-33 145.6 103 62.1
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 7.8e-33 144.4 88 76.1
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 1.5e-31 140.2 99 66.7
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 2.8e-30 136.0 98 65.3
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 2.4e-29 132.9 97 64.9
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.7e-27 126.7 131 57.3
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 3.2e-26 122.5 123 52.0
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 7.1e-26 121.3 75 78.7
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 8.1e-22 107.8 140 40.0
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.6e-17 93.6 155 31.6
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.5e-15 87.0 55 65.5
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 2.5e-15 86.3 74 50.0
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 2.8e-14 82.8 49 79.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 6.5e-11 71.6 49 69.4
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 8.2e-06 54.7 36 72.2


User provided reference genes

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