Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 0.0e+00 1313.5 670 100.0
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 0.0e+00 1172.1 670 88.2
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 0.0e+00 1150.2 671 86.4
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 0.0e+00 1142.5 671 85.8
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 0.0e+00 1122.1 669 85.2
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 5.4e-255 884.4 670 68.5
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.3e-253 879.8 663 68.9
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.3e-251 873.2 666 66.1
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 6.9e-250 867.5 666 65.8
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.5e-249 866.3 675 66.1
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.3e-248 863.2 647 68.0
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 1.9e-247 859.4 647 66.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 3.5e-246 855.1 644 66.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.9e-244 849.4 669 64.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.6e-244 847.8 669 64.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.3e-243 846.7 671 65.3
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.8e-242 842.8 674 66.2
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 5.8e-241 837.8 670 65.1
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.3e-240 836.6 670 65.1
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.7e-240 836.3 645 65.1
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 8.4e-240 833.9 670 64.9
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.6e-238 829.7 671 63.8
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 2.1e-238 829.3 666 63.1
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.0e-237 827.0 668 63.8
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.0e-237 827.0 674 64.2
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.3e-237 826.6 644 64.6
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.3e-237 825.9 679 62.9
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 6.7e-237 824.3 673 64.5
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 9.6e-236 820.5 638 63.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 2.8e-235 818.9 663 63.7
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.0e-233 812.8 643 63.6
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.4e-233 812.0 653 63.2
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.3e-232 810.1 668 64.4
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 2.2e-232 809.3 663 61.8
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 3.8e-232 808.5 660 63.2
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 3.8e-232 808.5 667 62.7
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 8.4e-232 807.4 660 62.1
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 2.5e-231 805.8 641 64.3
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 2.5e-231 805.8 666 63.4
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 4.2e-231 805.1 640 63.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 9.3e-231 803.9 672 61.6
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.2e-230 803.5 602 65.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.1e-230 801.2 664 62.2
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 1.0e-229 800.4 640 63.1
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.0e-229 800.4 689 61.2
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 1.8e-229 799.7 667 61.2
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 3.0e-229 798.9 640 63.8
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 6.7e-229 797.7 662 62.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.9e-228 796.2 669 59.8
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.9e-228 796.2 667 62.2
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.3e-228 795.4 664 61.6
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.3e-228 795.4 665 61.7
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 7.4e-228 794.3 699 60.4
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 8.2e-227 790.8 657 62.6
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.1e-226 790.4 663 60.8
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.8e-226 789.6 666 60.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.8e-226 789.6 663 61.1
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 3.1e-226 788.9 666 60.1
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 4.5e-225 785.0 637 61.9
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 4.5e-225 785.0 660 61.2
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.0e-224 783.9 657 60.7
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.9e-223 779.6 667 60.7
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 2.5e-223 779.2 595 66.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.2e-223 778.9 659 62.1
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.6e-222 776.5 664 60.4
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.4e-221 773.5 667 60.4
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 3.0e-221 772.3 672 60.9
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.3e-220 768.8 669 59.6
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.3e-219 766.9 671 59.9
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.7e-219 766.5 669 59.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.8e-219 765.0 663 59.7
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 8.2e-219 764.2 658 59.9
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.1e-218 763.8 639 61.2
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 3.1e-218 762.3 663 59.6
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 5.3e-218 761.5 663 59.7
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 6.9e-218 761.1 665 59.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.4e-217 758.8 668 59.6
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 4.5e-217 758.4 670 60.3
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 7.7e-217 757.7 669 59.3
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 7.7e-217 757.7 662 59.5
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-216 756.9 667 59.8
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 2.2e-216 756.1 658 59.4
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.9e-216 755.7 668 59.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 3.8e-216 755.4 586 65.2
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.4e-215 753.4 669 59.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.9e-215 753.1 661 60.4
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 3.2e-215 752.3 668 59.9
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.7e-214 748.4 585 66.3
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 4.7e-214 748.4 628 61.8
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.6e-212 742.7 627 60.4
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 6.3e-211 738.0 646 58.7
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 8.5e-208 727.6 643 59.4
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 7.2e-207 724.5 583 63.1
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 8.0e-206 721.1 673 57.8
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.6e-204 716.1 643 58.5
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 6.5e-200 701.4 646 56.7
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.5e-199 699.5 706 54.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.5e-199 699.5 657 55.4
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.7e-195 686.8 626 56.9
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.1e-190 669.8 567 59.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.3e-176 624.0 550 58.5
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 7.0e-170 601.7 565 54.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 4.1e-162 575.9 505 58.4
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.9e-159 567.0 694 45.8
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.3e-151 539.7 502 55.6
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-147 526.9 596 48.3
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 4.4e-140 502.7 587 48.6
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 9.9e-132 474.9 429 54.8
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.8e-126 456.8 461 51.2
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.7e-126 456.4 665 42.9
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 8.2e-118 428.7 624 41.8
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 2.2e-115 420.6 789 34.6
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 5.5e-114 416.0 397 59.9
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 3.4e-108 396.7 402 60.9
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 6.7e-104 382.5 394 51.0
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.6e-100 370.5 507 41.2
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 4.7e-89 333.2 195 77.9
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.9e-74 284.6 281 53.7
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 5.2e-72 276.6 326 47.2
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 3.1e-69 267.3 204 64.7
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.0e-67 262.3 635 31.8
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.8e-61 241.5 215 54.4
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 2.3e-59 234.6 227 54.6
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 8.0e-57 226.1 694 30.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.2e-55 222.2 635 29.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 9.8e-55 219.2 658 28.7
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.7e-43 181.8 284 40.5
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.9e-43 180.6 278 39.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.1e-42 179.1 138 70.3
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.5e-42 178.7 171 57.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 3.3e-42 177.6 118 72.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.1e-40 172.6 148 54.1
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 4.3e-34 150.6 140 57.9
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-32 144.8 300 34.0
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-31 142.1 180 42.2
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 2.0e-31 141.7 113 61.1
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-29 135.6 170 47.1
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-27 128.3 242 34.7
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 242 34.3
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.6e-27 126.7 242 34.3
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 242 34.3
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 242 34.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.2e-23 115.9 90 67.8
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.8e-23 113.6 169 39.6
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.9e-23 112.8 169 39.6
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.9e-23 112.8 169 40.8
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.2e-22 111.7 169 40.2
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 6.4e-22 110.2 172 40.1
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.8e-17 94.7 62 79.0
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.4e-16 92.4 117 42.7
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.4e-16 91.7 62 77.4
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 2.5e-10 71.6 40 80.0
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 9.6e-10 69.7 48 68.8
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 3.8e-06 57.8 49 55.1
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 3.8e-06 57.8 49 55.1


User provided reference genes

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