Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023507 Sechium edule HOM05D001756 ORTHO05D001581 2.3e-54 215.3 110 100.0
ClCG10G010060 Citrullus lanatus HOM05D001756 ORTHO05D001581 6.4e-28 127.5 88 76.1
MELO3C032871.2 Cucumis melo HOM05D001756 ORTHO05D001581 7.3e-24 114.0 88 71.6
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.5e-13 79.7 87 51.7
CsaV3_4G000100 Cucumis sativus L. HOM05D001756 ORTHO05D001581 1.5e-13 79.7 40 92.5
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 4.9e-12 74.7 87 49.4
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 1.4e-11 73.2 89 48.3
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.4e-11 73.2 82 46.3
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 2.4e-11 72.4 76 52.6
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 2.4e-11 72.4 92 47.8
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 7.1e-11 70.9 92 43.5
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 9.3e-11 70.5 82 48.8
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 2.7e-10 68.9 85 48.2
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.5e-10 68.6 91 48.4
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 3.5e-10 68.6 88 50.0
FvH4_2g03340 Fragaria vesca HOM05D001756 ORTHO05D001581 4.6e-10 68.2 90 47.8
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 6.0e-10 67.8 76 48.7
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.0e-09 67.0 81 48.1
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 1.0e-09 67.0 76 53.9
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 1.3e-09 66.6 96 44.8
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.3e-09 66.6 88 44.3
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-09 66.6 89 47.2
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-09 66.6 89 48.3
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.7e-09 66.2 83 48.2
Psat6g214400 Pisum sativum HOM05D001756 ORTHO05D001581 1.7e-09 66.2 87 47.1
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 1.7e-09 66.2 76 48.7
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 1.7e-09 66.2 79 50.6
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.7e-09 66.2 88 47.7
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.3e-09 65.9 78 44.9
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 2.3e-09 65.9 77 53.2
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.3e-09 65.9 89 47.2
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 2.3e-09 65.9 90 46.7
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 3.0e-09 65.5 78 50.0
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 3.0e-09 65.5 79 50.6
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 3.0e-09 65.5 90 50.0
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.9e-09 65.1 79 49.4
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.9e-09 65.1 78 44.9
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.9e-09 65.1 77 48.1
Lj2g0014409 Lotus japonicus HOM05D001756 ORTHO05D001581 3.9e-09 65.1 84 46.4
MD05G1105500 Malus domestica HOM05D001756 ORTHO05D001581 3.9e-09 65.1 91 45.1
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 5.1e-09 64.7 88 44.3
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 5.1e-09 64.7 90 50.0
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 6.6e-09 64.3 85 45.9
FAN27G0458 Fragaria x ananassa HOM05D001756 ORTHO05D001581 6.6e-09 64.3 90 45.6
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 6.6e-09 64.3 79 45.6
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 8.7e-09 63.9 83 45.8
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 8.7e-09 63.9 89 46.1
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 8.7e-09 63.9 77 48.1
TWI59G0044 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 8.7e-09 63.9 88 44.3
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 8.7e-09 63.9 85 42.4
Cc02_g20030 Coffea canephora HOM05D001756 ORTHO05D001581 1.1e-08 63.5 86 46.5
Glyma.20G135700 Glycine max HOM05D001756 ORTHO05D001581 1.1e-08 63.5 87 44.8
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.1e-08 63.5 89 46.1
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.1e-08 63.5 86 46.5
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.1e-08 63.5 86 46.5
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.1e-08 63.5 94 44.7
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 1.5e-08 63.2 79 48.1
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.5e-08 63.2 80 45.0
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 1.9e-08 62.8 81 46.9
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 1.9e-08 62.8 78 43.6
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.9e-08 62.8 79 45.6
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 1.9e-08 62.8 77 46.8
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.5e-08 62.4 79 46.8
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 2.5e-08 62.4 78 44.9
CiPaw.08G051600 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.5e-08 62.4 90 44.4
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.5e-08 62.4 77 45.5
Glyma.10G255800 Glycine max HOM05D001756 ORTHO05D001581 2.5e-08 62.4 87 44.8
Phvul.007G047000 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 2.5e-08 62.4 87 47.1
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 3.3e-08 62.0 77 44.2
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 3.3e-08 62.0 79 44.3
TPR.G21156 Trifolium pratense HOM05D001756 ORTHO05D001581 3.3e-08 62.0 87 46.0
FAN24G1384 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.3e-08 61.6 90 45.6
arahy.Tifrunner.gnm1.ann1.PFXG53 Arachis hypogaea HOM05D001756 ORTHO05D001581 5.6e-08 61.2 73 47.9
arahy.Tifrunner.gnm1.ann1.WWP4H1 Arachis hypogaea HOM05D001756 ORTHO05D001581 5.6e-08 61.2 88 44.3
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 5.6e-08 61.2 77 45.5
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 5.6e-08 61.2 77 49.4
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 5.6e-08 61.2 90 46.7
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.6e-08 61.2 81 39.5
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 5.6e-08 61.2 81 39.5
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 5.6e-08 61.2 75 48.0
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 7.3e-08 60.8 85 44.7
Lsat_1_v5_gn_3_86460 Lactuca sativa HOM05D001756 ORTHO05D001581 7.3e-08 60.8 81 45.7
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 7.3e-08 60.8 81 48.1
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 7.3e-08 60.8 85 45.9
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.6e-08 60.5 81 45.7
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 9.6e-08 60.5 85 43.5
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 9.6e-08 60.5 95 38.9
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 9.6e-08 60.5 87 43.7
Sabra09G0065700 Salix brachista HOM05D001756 ORTHO05D001581 9.6e-08 60.5 81 44.4
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 9.6e-08 60.5 96 42.7
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 1.3e-07 60.1 77 45.5
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.3e-07 60.1 85 44.7
Gohir.D03G030200 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.3e-07 60.1 85 44.7
Gorai.003G031900 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.3e-07 60.1 85 44.7
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 1.3e-07 60.1 78 48.7
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 1.3e-07 60.1 87 43.7
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.6e-07 59.7 88 44.3
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 1.6e-07 59.7 82 41.5
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.6e-07 59.7 80 45.0
CSS0036107 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.1e-07 59.3 82 40.2
Cfa013750 Carpinus fangiana HOM05D001756 ORTHO05D001581 2.1e-07 59.3 89 41.6
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 2.1e-07 59.3 91 41.8
Eucgr.I02494 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.1e-07 59.3 87 43.7
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 2.1e-07 59.3 83 47.0
CSS0026516 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.8e-07 58.9 81 37.0
Gohir.A02G150100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.8e-07 58.9 85 44.7
Potri.009G085600 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.8e-07 58.9 78 41.0
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 2.8e-07 58.9 88 44.3
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 2.8e-07 58.9 75 44.0
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 3.6e-07 58.5 79 43.0
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 3.6e-07 58.5 64 48.4
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 3.6e-07 58.5 87 42.5
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 3.6e-07 58.5 87 43.7
HanXRQChr10g0305161 Helianthus annuus HOM05D001756 ORTHO05D001581 3.6e-07 58.5 82 42.7
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 4.8e-07 58.2 79 41.8
arahy.Tifrunner.gnm1.ann1.KSYJ7I Arachis hypogaea HOM05D001756 ORTHO05D001581 4.8e-07 58.2 73 52.1
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 4.8e-07 58.2 78 43.6
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 4.8e-07 58.2 83 48.2
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 4.8e-07 58.2 84 41.7
arahy.Tifrunner.gnm1.ann1.LVLW1Z Arachis hypogaea HOM05D001756 ORTHO05D001581 6.2e-07 57.8 88 43.2
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 6.2e-07 57.8 64 48.4
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 6.2e-07 57.8 100 40.0
MD10G1110000 Malus domestica HOM05D001756 ORTHO05D001581 6.2e-07 57.8 90 43.3
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 6.2e-07 57.8 82 43.9
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 6.2e-07 57.8 77 44.2
arahy.Tifrunner.gnm1.ann1.F1MTJK Arachis hypogaea HOM05D001756 ORTHO05D001581 8.1e-07 57.4 82 42.7
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 8.1e-07 57.4 67 47.8
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 8.1e-07 57.4 86 44.2
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 8.1e-07 57.4 87 44.8
MD15G1066300 Malus domestica HOM05D001756 ORTHO05D001581 1.1e-06 57.0 83 43.4
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 1.1e-06 57.0 69 47.8
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.4e-06 56.6 82 41.5
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.4e-06 56.6 75 44.0
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.4e-06 56.6 75 44.0
HanXRQChr08g0233231 Helianthus annuus HOM05D001756 ORTHO05D001581 1.4e-06 56.6 72 47.2
Medtr1g106030 Medicago truncatula HOM05D001756 ORTHO05D001581 1.4e-06 56.6 90 45.6
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 1.4e-06 56.6 87 44.8
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 1.8e-06 56.2 85 44.7
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 1.8e-06 56.2 74 41.9
HanXRQChr03g0074741 Helianthus annuus HOM05D001756 ORTHO05D001581 1.8e-06 56.2 79 41.8
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 1.8e-06 56.2 87 42.5
MELO3C007654.2 Cucumis melo HOM05D001756 ORTHO05D001581 2.4e-06 55.8 73 45.2
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.4e-06 55.8 87 42.5
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.4e-06 55.8 77 45.5
Gohir.A03G181100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.4e-06 55.8 75 48.0
Gorai.013G051800 Gossypium raimondii HOM05D001756 ORTHO05D001581 2.4e-06 55.8 91 49.5
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.1e-06 55.5 80 41.2
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 3.1e-06 55.5 77 42.9
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 3.1e-06 55.5 76 42.1
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 3.1e-06 55.5 76 42.1
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 3.1e-06 55.5 77 42.9
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.1e-06 55.5 86 43.0
Duzib248G0626 Durio zibethinus HOM05D001756 ORTHO05D001581 3.1e-06 55.5 95 46.3
FvH4_2g03370 Fragaria vesca HOM05D001756 ORTHO05D001581 3.1e-06 55.5 86 44.2
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 3.1e-06 55.5 77 45.5
QL11p029356 Quercus lobata HOM05D001756 ORTHO05D001581 3.1e-06 55.5 90 44.4
arahy.Tifrunner.gnm1.ann1.22FXNP Arachis hypogaea HOM05D001756 ORTHO05D001581 4.0e-06 55.1 82 41.5
CiPaw.06G164100 Carya illinoinensis HOM05D001756 ORTHO05D001581 4.0e-06 55.1 83 41.0
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 4.0e-06 55.1 85 45.9
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 4.0e-06 55.1 81 40.7
FvH4_1g18100 Fragaria vesca HOM05D001756 ORTHO05D001581 4.0e-06 55.1 33 69.7
FAN19G1808 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.0e-06 55.1 33 69.7
Glyma.06G048200 Glycine max HOM05D001756 ORTHO05D001581 4.0e-06 55.1 84 42.9
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.0e-06 55.1 82 43.9
Phvul.003G233400 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 4.0e-06 55.1 85 45.9
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 4.0e-06 55.1 82 40.2
Atru.chr13.861 Acer truncatum HOM05D001756 ORTHO05D001581 5.3e-06 54.7 76 40.8
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 5.3e-06 54.7 64 45.3
Nitab4.5_0000142g0340 Nicotiana tabacum HOM05D001756 ORTHO05D001581 5.3e-06 54.7 76 43.4
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 5.3e-06 54.7 79 41.8
ATR0739G092 Amborella trichopoda HOM05D001756 ORTHO05D001581 6.9e-06 54.3 76 40.8
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 6.9e-06 54.3 85 44.7
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 6.9e-06 54.3 99 39.4
Gohir.A13G047800 Gossypium hirsutum HOM05D001756 ORTHO05D001581 6.9e-06 54.3 95 46.3
HanXRQChr09g0255351 Helianthus annuus HOM05D001756 ORTHO05D001581 6.9e-06 54.3 76 42.1
Nn5g30652 Nelumbo nucifera HOM05D001756 ORTHO05D001581 6.9e-06 54.3 78 43.6
SalBow2G0436 Salvia bowleyana HOM05D001756 ORTHO05D001581 6.9e-06 54.3 81 45.7
SalBow2G3148 Salvia bowleyana HOM05D001756 ORTHO05D001581 6.9e-06 54.3 81 45.7
TWI77G0501 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 6.9e-06 54.3 77 44.2
COL.COLO4_32487 Corchorus olitorius HOM05D001756 ORTHO05D001581 9.0e-06 53.9 37 67.6
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 9.0e-06 53.9 81 37.0
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 9.0e-06 53.9 80 43.8
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 9.0e-06 53.9 79 40.5
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 9.0e-06 53.9 82 40.2
Lsat_1_v5_gn_5_117161 Lactuca sativa HOM05D001756 ORTHO05D001581 9.0e-06 53.9 73 39.7


User provided reference genes

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