Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.9e-76 289.3 165 100.0
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 5.8e-57 224.6 158 76.6
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.1e-51 206.1 160 71.9
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 4.4e-49 198.4 162 70.4
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.3e-27 127.1 126 53.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.8e-27 125.2 126 52.4
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 6.9e-26 121.3 124 54.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.2e-25 120.6 126 50.0
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.4e-25 119.0 123 52.0
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 3.4e-25 119.0 123 49.6
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.4e-25 119.0 127 50.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 3.4e-25 119.0 126 50.0
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.5e-25 118.6 127 52.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 5.8e-25 118.2 110 54.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 7.6e-25 117.9 123 52.8
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 9.9e-25 117.5 110 53.6
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.2e-24 116.3 134 48.5
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 6.4e-24 114.8 123 51.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 8.4e-24 114.4 111 53.2
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.9e-23 113.2 125 46.4
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.9e-23 113.2 123 51.2
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.4e-23 112.8 118 49.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.4e-23 112.8 118 49.2
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.2e-23 112.5 123 48.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 4.2e-23 112.1 110 53.6
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 5.4e-23 111.7 106 56.6
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 9.3e-23 110.9 119 49.6
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.2e-22 110.5 112 50.9
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.6e-22 110.2 134 46.3
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.6e-22 110.2 122 50.0
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.1e-22 109.8 126 48.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.1e-22 109.8 135 43.7
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 126 48.4
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.0e-21 107.5 129 45.7
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.0e-21 107.5 113 52.2
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.8e-21 106.7 120 45.8
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.8e-21 106.7 120 45.8
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.8e-21 106.7 118 48.3
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 2.3e-21 106.3 116 53.4
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.3e-21 106.3 124 47.6
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.3e-21 106.3 118 48.3
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.0e-21 105.9 135 47.4
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.0e-21 105.9 124 46.8
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 3.0e-21 105.9 122 49.2
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.9e-21 105.5 131 54.2
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 6.7e-21 104.8 113 50.4
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 6.7e-21 104.8 118 49.2
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 6.7e-21 104.8 118 49.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 8.7e-21 104.4 133 54.1
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.1e-20 104.0 119 48.7
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.9e-20 103.2 118 46.6
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.5e-20 102.8 142 43.7
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.5e-20 102.8 122 43.4
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 2.5e-20 102.8 137 43.8
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 3.3e-20 102.4 123 47.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 3.3e-20 102.4 104 52.9
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.3e-20 102.4 112 48.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.3e-20 102.4 112 48.2
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.3e-20 102.4 130 48.5
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 5.6e-20 101.7 142 43.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.6e-20 101.7 113 43.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.6e-20 101.7 117 49.6
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 7.4e-20 101.3 122 45.1
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 9.6e-20 100.9 107 51.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.3e-19 100.5 138 44.9
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.3e-19 100.5 119 45.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.6e-19 100.1 119 45.4
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.6e-19 100.1 118 48.3
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.6e-19 100.1 118 45.8
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 2.1e-19 99.8 164 39.6
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 2.8e-19 99.4 122 44.3
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.6e-19 99.0 125 49.6
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.8e-19 98.6 126 46.0
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 6.2e-19 98.2 130 44.6
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 6.2e-19 98.2 109 47.7
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 8.1e-19 97.8 88 58.0
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 8.1e-19 97.8 126 45.2
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.4e-18 97.1 126 45.2
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.4e-18 97.1 113 47.8
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.8e-18 96.7 123 45.5
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.8e-18 96.7 118 48.3
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.0e-18 95.5 115 47.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.3e-18 95.1 122 44.3
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 9.0e-18 94.4 120 46.7
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.5e-17 93.6 113 45.1
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-17 93.2 113 45.1
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.0e-17 93.2 112 48.2
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.0e-17 93.2 112 48.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.4e-17 92.4 120 40.8
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 4.5e-17 92.0 113 45.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 4.5e-17 92.0 113 45.1
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 4.5e-17 92.0 113 41.6
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 5.8e-17 91.7 107 44.9
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.8e-17 91.7 114 50.9
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 5.8e-17 91.7 111 47.7
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 7.6e-17 91.3 117 45.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 9.9e-17 90.9 123 41.5
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-16 90.5 113 43.4
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.7e-16 90.1 116 46.6
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.7e-16 90.1 117 45.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.2e-16 89.7 113 42.5
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 2.2e-16 89.7 117 41.9
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.2e-16 89.7 116 44.0
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.9e-16 89.4 113 41.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-16 89.4 119 40.3
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-16 89.4 119 40.3
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-16 89.4 119 40.3
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.8e-16 89.0 113 41.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 3.8e-16 89.0 117 41.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 3.8e-16 89.0 119 42.9
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 4.9e-16 88.6 104 51.0
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 6.4e-16 88.2 107 43.9
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 6.4e-16 88.2 111 44.1
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 6.4e-16 88.2 124 42.7
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-15 87.4 117 40.2
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.9e-15 86.7 117 41.0
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.9e-15 86.7 117 41.0
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.4e-15 86.3 123 40.7
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.4e-15 86.3 106 46.2
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 3.2e-15 85.9 126 41.3
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-14 83.2 116 38.8
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 6.0e-14 81.6 115 44.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 6.0e-14 81.6 133 42.9
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 6.0e-14 81.6 113 39.8
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.3e-13 80.5 73 56.2
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.3e-13 80.5 105 41.9
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.8e-13 80.1 124 42.7
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.1e-13 78.6 120 39.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 6.7e-13 78.2 113 38.9
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 9.6e-12 74.3 69 53.6
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 6.2e-11 71.6 121 40.5
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 4.0e-10 68.9 57 59.6
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.9e-08 62.8 118 34.7
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 8.4e-08 61.2 41 61.0
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.2e-07 59.3 45 62.2
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.2e-07 59.3 105 32.4
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.2e-07 59.3 116 35.3
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 4.2e-07 58.9 108 36.1
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.5e-07 58.5 91 41.8
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.6e-06 57.0 131 30.5
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.6e-06 57.0 90 38.9
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 2.1e-06 56.6 130 32.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.5e-06 55.8 134 33.6
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 3.5e-06 55.8 82 42.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.5e-06 55.8 123 34.1
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 6.0e-06 55.1 96 39.6
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 6.0e-06 55.1 84 38.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.9e-06 54.7 141 29.8


User provided reference genes

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