Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 3.7e-160 568.2 286 100.0
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 5.4e-119 431.4 266 80.1
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 7.0e-119 431.0 238 87.4
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.2e-118 430.3 241 87.1
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.1e-116 423.7 236 86.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.9e-111 406.4 241 81.3
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 3.2e-111 405.6 241 80.9
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.2e-110 403.7 243 81.5
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.6e-110 403.3 244 80.7
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.6e-110 403.3 241 80.9
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.5e-110 402.1 241 80.1
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 4.6e-110 401.7 236 82.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 6.0e-110 401.4 244 80.3
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-109 400.6 247 79.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-109 399.8 247 78.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.7e-109 399.8 244 80.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.7e-109 399.8 241 80.1
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.7e-109 399.8 241 81.3
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.3e-109 399.4 251 77.7
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 3.0e-109 399.1 248 78.2
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.0e-109 399.1 248 78.2
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.0e-109 399.1 248 78.2
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 3.0e-109 399.1 236 82.2
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.9e-109 398.7 241 78.8
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 6.6e-109 397.9 239 79.9
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 6.6e-109 397.9 238 81.5
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.1e-108 397.1 241 79.7
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.5e-108 396.7 245 79.2
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.5e-108 396.7 241 80.5
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.9e-108 396.4 262 74.8
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.9e-108 396.4 262 74.8
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.9e-108 396.4 248 77.4
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.5e-108 396.0 238 79.4
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.5e-108 396.0 241 80.1
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.3e-108 395.6 246 78.9
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 5.6e-108 394.8 239 80.8
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 5.6e-108 394.8 239 80.8
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 5.6e-108 394.8 241 80.1
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.3e-108 394.4 243 79.4
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 9.5e-108 394.0 238 79.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.2e-107 393.7 236 79.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.6e-107 393.3 257 76.7
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.6e-107 393.3 258 76.0
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.6e-107 393.3 258 76.0
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.7e-107 391.7 237 80.6
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 4.7e-107 391.7 238 80.3
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 8.1e-107 391.0 252 77.0
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 1.1e-106 390.6 245 77.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-106 390.6 238 79.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.1e-106 390.6 245 77.6
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.1e-106 390.6 252 77.0
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.4e-106 390.2 241 78.0
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.8e-106 389.8 237 79.3
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.8e-106 389.8 262 74.8
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 6.8e-106 387.9 245 76.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 8.9e-106 387.5 253 75.1
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.2e-105 387.1 247 76.5
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.2e-105 387.1 242 78.1
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.5e-105 386.7 237 78.9
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.0e-105 386.3 239 77.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.6e-105 386.0 240 76.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.4e-105 385.6 240 78.3
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.4e-105 385.6 237 79.3
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 4.4e-105 385.2 246 76.0
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.8e-105 384.8 237 79.3
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 5.8e-105 384.8 247 76.9
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 7.5e-105 384.4 243 75.7
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 7.5e-105 384.4 239 77.0
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.7e-104 383.3 245 75.5
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.7e-104 383.3 245 75.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.7e-104 383.3 239 77.4
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.9e-104 382.5 221 83.7
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-104 382.1 245 76.3
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 3.7e-104 382.1 245 76.3
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 3.7e-104 382.1 245 76.3
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 4.9e-104 381.7 246 75.6
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 8.3e-104 380.9 239 77.4
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.1e-103 380.6 238 78.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.9e-103 379.8 239 77.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.4e-103 379.4 239 77.8
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 5.4e-103 378.3 241 75.5
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 9.2e-103 377.5 252 73.8
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.2e-102 377.1 237 77.6
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.2e-102 377.1 248 73.8
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.2e-102 377.1 239 76.2
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.1e-102 376.3 239 75.7
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 2.1e-102 376.3 237 75.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.1e-102 376.3 241 76.8
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 6.0e-102 374.8 239 75.3
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 7.8e-102 374.4 278 67.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 7.8e-102 374.4 247 72.9
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.3e-101 373.6 241 75.9
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 6.6e-101 371.3 241 74.7
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 8.6e-101 370.9 242 71.5
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-100 370.5 237 77.2
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.1e-100 370.5 239 75.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 3.3e-100 369.0 241 74.3
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.1e-98 362.5 243 72.4
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 8.9e-98 360.9 246 72.4
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.2e-97 360.5 237 75.5
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.7e-96 355.5 239 71.1
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.1e-95 354.0 224 75.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.9e-95 353.2 258 68.2
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.2e-95 350.9 225 74.7
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 6.6e-93 344.7 364 52.7
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.2e-91 340.5 261 66.7
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.2e-89 334.0 255 67.1
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 7.6e-89 331.3 239 66.5
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.4e-88 327.8 245 67.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 2.7e-86 322.8 240 65.0
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.0e-85 320.9 222 70.3
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.3e-85 319.7 240 65.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 2.8e-83 312.8 238 64.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 9.0e-82 307.8 188 79.3
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.2e-81 307.4 240 62.1
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 7.9e-78 294.7 234 61.5
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.7e-77 293.5 234 60.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 4.0e-74 282.3 173 80.3
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 6.9e-74 281.6 249 56.6
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.4e-73 279.3 174 78.7
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 8.4e-72 274.6 223 63.7
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 6.0e-70 268.5 240 59.6
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.3e-68 262.7 175 73.1
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-65 253.8 255 54.1
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-63 247.7 239 53.1
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.4e-63 247.3 220 57.7
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-53 214.5 130 78.5
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.0e-53 213.0 171 58.5
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-52 210.7 248 47.6
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.5e-52 209.9 153 73.2
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 7.7e-49 198.4 124 80.6
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.8e-45 187.2 226 41.6
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.0e-45 186.4 124 76.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-42 177.9 112 74.1
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.4e-41 172.9 219 41.1
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.8e-40 169.5 219 41.6
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.5e-33 146.4 110 68.2
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-32 144.1 87 79.3
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.5e-31 141.0 86 74.4
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-29 134.8 103 64.1
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-29 133.7 143 53.1
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 3.2e-23 113.2 76 71.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.3e-21 107.1 250 28.8
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.0e-21 106.3 78 65.4
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-19 100.9 69 66.7
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.6e-14 83.2 86 50.0
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-12 78.2 171 38.0
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.3e-11 74.7 249 26.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.4e-10 69.3 217 28.6
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-09 66.2 67 55.2
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.5e-09 66.2 43 65.1
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-08 64.3 65 56.9
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 2.9e-08 63.5 230 26.1
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 3.8e-08 63.2 239 26.8
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 3.8e-08 63.2 229 24.9
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 8.6e-08 62.0 230 25.7
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 1.9e-07 60.8 250 25.6
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 2.5e-07 60.5 233 27.0
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.3e-07 60.1 238 27.3
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 4.3e-07 59.7 233 25.8
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 5.6e-07 59.3 252 27.0
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 7.3e-07 58.9 198 29.8
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 6.1e-06 55.8 231 25.1
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 8.0e-06 55.5 28 85.7


User provided reference genes

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