Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1428.7 755 100.0
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1308.5 755 90.6
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1300.8 757 89.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1289.2 755 89.0
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 0.0e+00 1286.9 755 90.2
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1139.0 758 78.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1137.9 758 78.2
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1124.0 751 77.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1123.2 758 77.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1099.7 758 75.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1096.6 751 74.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 774 73.6
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1087.8 757 74.1
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1087.0 753 74.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1085.5 756 73.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1084.3 757 74.0
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1083.9 753 74.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1082.8 756 73.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1079.7 753 73.6
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1075.5 751 73.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 5.2e-312 1073.5 756 73.0
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.1e-311 1072.0 756 72.6
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.6e-311 1071.6 756 72.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.8e-310 1068.9 753 73.8
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 5.1e-310 1067.4 756 72.8
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.5e-309 1065.1 752 73.1
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 752 73.3
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.6e-309 1063.9 749 75.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 7.4e-309 1063.5 752 73.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 7.4e-309 1063.5 756 72.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 753 72.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 3.7e-308 1061.2 756 71.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 4.8e-308 1060.8 756 72.8
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 6.2e-308 1060.4 756 72.0
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 6.2e-308 1060.4 752 73.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.4e-307 1059.3 746 73.6
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 2.4e-307 1058.5 753 72.6
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 3.1e-307 1058.1 760 71.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 4.0e-307 1057.7 774 71.6
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 762 72.3
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 774 71.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.6e-306 1053.5 772 71.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 2.5e-304 1048.5 753 71.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 9.3e-304 1046.6 801 69.5
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.2e-303 1046.2 756 71.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.6e-303 1045.8 763 71.0
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.7e-302 1040.4 750 71.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 3.7e-300 1034.6 756 70.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 9.0e-299 1030.0 748 71.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 8.4e-297 1023.5 751 70.7
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 754 70.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.6e-295 1019.2 757 70.3
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.3e-294 1016.1 747 71.1
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.3e-294 1016.1 758 69.4
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 758 69.5
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.9e-293 1012.3 752 68.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.2e-292 1008.8 710 72.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 9.0e-291 1003.4 751 68.4
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 759 68.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.9e-289 998.4 747 69.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 2.9e-289 998.4 754 68.2
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 4.2e-288 994.6 760 67.9
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.5e-288 994.2 756 67.7
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 7.2e-288 993.8 757 68.3
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.3e-286 988.8 752 67.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.4e-283 978.8 759 67.1
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.4e-282 974.9 782 65.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 5.9e-282 974.2 757 67.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.5e-281 970.7 766 68.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.4e-280 969.5 770 66.9
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.2e-280 968.4 759 67.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.2e-279 966.5 756 68.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 7.9e-279 963.8 767 66.2
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.1e-278 961.1 753 66.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 9.7e-277 956.8 759 65.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 9.7e-277 956.8 759 65.0
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.3e-276 956.4 760 65.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-276 955.7 759 65.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 3.7e-276 954.9 763 64.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 3.7e-276 954.9 763 64.9
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.1e-275 953.4 761 64.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 3.1e-275 951.8 761 64.5
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 3.1e-275 951.8 761 64.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 4.1e-275 951.4 759 64.7
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 4.1e-275 951.4 759 64.7
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 9.1e-275 950.3 755 65.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.2e-274 949.9 744 64.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.5e-272 941.0 755 64.5
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.2e-271 939.9 745 67.1
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 6.1e-271 937.6 744 65.1
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.8e-270 936.0 686 71.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.3e-268 927.5 774 65.2
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.0e-265 920.2 765 64.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.3e-260 903.3 634 72.4
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.7e-260 901.7 768 62.9
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.4e-259 899.0 756 61.9
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 5.9e-258 894.4 734 63.9
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.2e-252 875.9 707 65.1
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 6.3e-252 874.4 755 61.3
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.8e-246 856.3 642 68.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.0e-246 855.1 749 60.5
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 7.0e-243 844.3 815 57.7
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.2e-239 831.2 762 56.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-238 829.7 757 58.3
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 2.2e-236 822.8 756 58.3
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.4e-235 820.1 760 56.7
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.4e-235 819.3 758 58.7
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.4e-235 819.3 758 58.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 5.2e-230 801.6 727 58.5
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.0e-229 799.7 528 77.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.6e-229 799.3 649 65.9
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.4e-220 767.7 528 73.9
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.0e-218 761.5 536 73.1
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.2e-215 753.8 756 53.6
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 8.1e-207 724.5 532 67.7
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.3e-204 717.2 759 53.1
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 8.4e-204 714.5 720 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 5.1e-201 705.3 748 49.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.4e-195 687.2 728 51.4
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.5e-195 685.3 753 50.2
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 7.4e-192 674.9 555 64.9
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.8e-175 619.8 742 47.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.4e-166 590.1 748 47.7
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.5e-155 553.5 383 74.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 3.2e-147 526.6 602 48.7
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.7e-127 461.1 345 68.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.4e-126 457.2 388 59.5
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.5e-112 409.1 474 51.3
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.0e-108 397.1 744 37.0
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.6e-88 329.3 297 60.3
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 5.1e-84 316.6 754 28.1
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.2e-80 305.4 834 29.0
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.2e-72 278.9 216 68.1
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.9e-69 266.2 515 39.0
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.4e-54 216.1 222 55.0
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 6.5e-47 193.4 202 55.0
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.0e-40 171.8 120 68.3
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.5e-38 164.9 151 58.9
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.6e-35 154.8 136 61.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.7e-31 142.1 102 70.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 7.2e-30 136.7 239 41.4
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 2.3e-28 131.7 113 60.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.3e-26 125.9 87 70.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 3.7e-26 124.4 210 40.5
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.3e-26 123.6 79 73.4
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.1e-25 121.3 79 73.4
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 3.1e-25 121.3 218 40.4
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 8.9e-20 103.2 91 58.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.5e-16 90.9 75 62.7
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 2.9e-15 88.2 116 41.4
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.6e-15 87.0 115 43.5
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-12 79.3 79 53.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 7.5e-11 73.6 101 42.6
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.3e-10 72.8 98 39.8
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.2e-10 72.0 73 53.4
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.2e-10 72.0 73 53.4
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.9e-10 70.9 103 45.6
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 1.4e-09 69.3 73 52.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 3.2e-09 68.2 63 55.6
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 2.3e-07 62.0 55 56.4
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.6e-07 60.5 42 64.3
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.5e-06 59.3 39 76.9


User provided reference genes

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