Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 3.2e-172 608.2 286 100.0
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 9.7e-161 570.1 286 92.0
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 2.8e-160 568.5 286 92.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 7.4e-153 543.9 284 87.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 3.7e-152 541.6 284 87.0
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 3.5e-150 535.0 284 85.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 2.2e-149 532.3 284 85.9
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.5e-148 529.6 284 86.6
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 4.2e-148 528.1 284 84.9
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 5.5e-148 527.7 288 84.4
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 9.4e-148 526.9 284 83.5
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.2e-147 526.6 284 85.6
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.2e-147 526.6 284 85.6
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.2e-147 526.6 284 83.5
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.6e-147 526.2 286 83.2
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 85.6
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 85.6
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 4.7e-147 524.6 284 83.5
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 8.0e-147 523.9 284 83.5
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.8e-146 522.7 284 83.1
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 83.5
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 4.0e-146 521.5 284 85.2
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 4.0e-146 521.5 284 83.8
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 5.2e-146 521.2 287 82.6
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.2e-146 521.2 284 83.8
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 6.7e-146 520.8 284 84.5
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 6.7e-146 520.8 284 84.5
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 82.0
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.5e-145 519.6 286 85.7
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 83.5
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 2.0e-145 519.2 284 83.5
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 2.0e-145 519.2 284 82.7
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.0e-145 519.2 284 83.1
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 3.3e-145 518.5 284 83.1
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.3e-145 518.5 284 83.1
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 4.4e-145 518.1 284 83.1
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 4.4e-145 518.1 283 84.1
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 5.7e-145 517.7 284 82.7
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 9.7e-145 516.9 281 84.7
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.3e-144 516.5 286 83.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.3e-144 516.5 284 83.1
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 1.7e-144 516.2 288 83.0
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 83.5
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.8e-144 515.4 281 83.3
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 82.0
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 4.8e-144 514.6 287 83.6
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 8.2e-144 513.8 292 81.2
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.4e-143 513.1 283 83.4
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 1.8e-143 512.7 283 80.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.8e-143 512.7 285 82.1
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.4e-143 512.3 284 81.3
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 4.1e-143 511.5 285 84.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 2.6e-142 508.8 283 82.3
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.6e-142 508.8 287 80.5
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 4.5e-142 508.1 284 81.7
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 5.9e-142 507.7 284 83.1
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 7.7e-142 507.3 285 80.0
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.3e-141 506.5 284 79.9
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 79.9
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 2.2e-141 505.8 286 81.5
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 79.6
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 6.5e-141 504.2 282 81.6
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.1e-140 503.4 301 77.7
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 1.9e-140 502.7 281 80.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 1.9e-140 502.7 284 79.6
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 1.9e-140 502.7 280 82.5
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 2.5e-140 502.3 284 81.3
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 2.5e-140 502.3 283 79.9
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 4.2e-140 501.5 284 80.6
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.2e-140 501.5 283 80.2
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 7.2e-140 500.7 272 82.4
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.7e-139 498.8 285 80.0
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.0e-138 496.9 284 81.3
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.0e-138 496.9 287 78.4
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.4e-138 496.5 284 81.7
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.8e-138 496.1 279 80.6
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 2.3e-138 495.7 284 81.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 6.8e-138 494.2 284 80.6
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 6.8e-138 494.2 284 80.6
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 6.8e-138 494.2 284 81.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 6.8e-138 494.2 284 80.6
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-137 493.4 284 81.0
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 1.5e-137 493.0 284 78.2
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 2.6e-137 492.3 281 81.1
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 80.6
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 4.4e-137 491.5 279 79.9
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.7e-136 489.6 284 80.3
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.8e-136 488.0 284 80.6
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 6.3e-136 487.6 279 81.4
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 8.3e-136 487.3 285 81.1
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 8.3e-136 487.3 285 81.1
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.1e-135 486.9 270 82.2
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.4e-135 486.5 283 79.5
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 2.4e-135 485.7 285 80.7
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 2.4e-135 485.7 285 78.6
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.1e-135 485.3 280 78.2
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 7.0e-135 484.2 285 80.7
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 9.1e-135 483.8 278 79.9
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 1.6e-134 483.0 284 77.1
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 4.5e-134 481.5 282 79.1
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 6.5e-133 477.6 329 69.6
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.5e-132 476.5 284 77.1
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 2.5e-132 475.7 281 75.4
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 3.2e-132 475.3 297 75.8
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 2.1e-131 472.6 284 76.8
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 3.4e-129 465.3 246 87.0
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 7.5e-129 464.2 278 75.5
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 2.0e-126 456.1 275 74.9
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.0e-126 456.1 277 74.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.9e-122 440.7 235 86.0
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.6e-121 439.1 286 75.2
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 3.4e-121 438.7 274 74.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 9.5e-116 420.6 233 80.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 4.0e-114 415.2 281 66.9
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 2.0e-110 402.9 225 82.2
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 6.2e-107 391.3 278 65.5
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 3.1e-106 389.0 279 64.2
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 4.4e-105 385.2 285 64.9
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 3.2e-103 379.0 196 87.8
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 1.1e-98 364.0 219 77.2
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 8.1e-91 337.8 272 62.5
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 6.8e-90 334.7 282 57.4
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 7.6e-89 331.3 288 58.7
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 1.9e-79 300.1 167 83.2
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 5.4e-79 298.5 171 81.9
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 9.0e-74 281.2 258 51.2
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 5.8e-65 251.9 277 46.2
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 7.1e-63 245.0 231 54.1
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.6e-62 243.8 282 47.5
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 2.3e-61 240.0 275 45.8
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.3e-48 197.6 114 74.6
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 2.4e-42 176.8 103 72.8
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 7.5e-20 102.1 78 62.8
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.5e-15 87.8 67 62.7
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 8.0e-14 82.0 52 73.1
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 4.4e-12 76.3 56 57.1
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 6.1e-06 55.8 47 59.6


User provided reference genes

Program Settings