Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 3.5e-181 638.3 347 100.0
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 3.3e-163 578.6 343 91.3
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 4.3e-163 578.2 343 91.0
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 1.5e-160 569.7 344 86.0
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 7.0e-129 464.5 346 64.5
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 2.1e-125 453.0 344 61.9
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 6.7e-124 448.0 341 62.8
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 2.8e-122 442.6 345 62.0
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 1.8e-121 439.9 346 61.0
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 5.3e-121 438.3 355 60.8
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 5.3e-121 438.3 343 62.4
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 9.1e-121 437.6 357 61.1
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 2.6e-120 436.0 343 61.5
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 5.9e-120 434.9 341 61.3
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 8.5e-119 431.0 345 60.3
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 1.1e-118 430.6 346 60.4
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.1e-118 430.6 350 60.6
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.5e-118 429.5 344 59.0
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 1.2e-117 427.2 344 59.0
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 1.6e-117 426.8 344 59.0
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.1e-117 426.4 348 59.8
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.0e-116 424.1 395 53.7
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 4.0e-116 422.2 350 58.6
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 4.0e-116 422.2 347 58.8
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 6.8e-116 421.4 348 59.2
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.8e-116 421.4 348 59.2
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 6.8e-116 421.4 343 63.3
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 1.5e-115 420.2 344 63.7
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 1.5e-115 420.2 347 59.7
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 3.4e-115 419.1 350 62.9
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 7.5e-115 417.9 348 58.9
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 3.7e-114 415.6 346 65.6
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 4.8e-114 415.2 344 59.9
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 1.4e-113 413.7 346 57.8
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 1.8e-113 413.3 346 63.9
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 3.1e-113 412.5 347 58.8
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 5.3e-113 411.8 346 59.0
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 7.0e-113 411.4 348 66.1
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 9.1e-113 411.0 346 59.0
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.6e-112 410.2 345 68.1
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 2.0e-112 409.8 346 58.7
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.5e-112 408.7 346 62.4
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-111 407.1 351 63.8
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-111 407.1 351 63.8
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.3e-111 407.1 346 62.7
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 1.3e-111 407.1 348 63.8
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 2.2e-111 406.4 346 57.5
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 5.0e-111 405.2 350 62.9
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 6.5e-111 404.8 346 58.7
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.1e-110 404.1 347 63.1
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 1.5e-110 403.7 347 63.1
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 3.2e-110 402.5 346 57.2
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 7.2e-110 401.4 345 58.0
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.6e-109 400.2 315 68.9
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 2.1e-109 399.8 346 61.6
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 1.0e-108 397.5 346 62.1
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.3e-108 396.4 345 56.5
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 3.0e-108 396.0 346 63.3
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 3.0e-108 396.0 346 62.1
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 4.0e-108 395.6 344 61.3
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 6.8e-108 394.8 344 57.0
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 2.6e-107 392.9 346 63.0
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 3.4e-107 392.5 341 63.6
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 3.4e-107 392.5 349 65.6
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 1.3e-106 390.6 344 56.4
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 1.3e-106 390.6 346 60.7
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.8e-106 389.4 346 62.7
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 6.3e-106 388.3 345 57.1
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.4e-105 387.1 346 63.6
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 2.7e-104 382.9 345 55.9
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.7e-104 382.9 341 56.9
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.3e-103 380.6 345 56.5
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 8.6e-103 377.9 349 65.6
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.1e-102 377.5 348 56.0
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 2.3e-100 369.8 347 53.6
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 5.2e-100 368.6 336 55.7
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 1.2e-99 367.5 352 53.1
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 2.0e-99 366.7 349 52.1
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 2.6e-99 366.3 350 52.0
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 4.4e-99 365.5 351 55.3
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 9.8e-99 364.4 349 53.0
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 9.8e-99 364.4 348 61.5
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 9.8e-99 364.4 347 50.7
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 1.3e-98 364.0 349 56.2
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 1.7e-98 363.6 347 59.9
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 1.7e-98 363.6 347 59.9
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 2.8e-98 362.8 343 60.6
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 2.8e-98 362.8 345 51.9
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.9e-95 352.8 343 60.6
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 1.1e-94 350.9 343 58.3
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 2.5e-94 349.7 346 63.0
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 1.4e-92 344.0 329 58.4
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 1.8e-92 343.6 342 51.2
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 2.3e-87 326.6 347 49.9
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 6.6e-87 325.1 345 47.8
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 8.0e-85 318.2 347 49.6
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 4.6e-80 302.4 349 51.3
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 1.5e-78 297.4 274 67.2
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 3.3e-78 296.2 342 45.9
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 1.2e-69 267.7 238 54.6
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.2e-67 261.2 222 72.1
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 2.9e-66 256.5 220 65.5
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.4e-65 254.2 222 55.4
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 3.2e-65 253.1 345 39.7
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 3.2e-65 253.1 222 55.0
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 2.7e-64 250.0 224 63.8
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 2.3e-63 246.9 384 35.9
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 8.7e-63 245.0 222 54.5
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 5.6e-62 242.3 220 54.5
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-61 241.1 211 64.9
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-61 241.1 211 64.9
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 6.9e-60 235.3 209 55.5
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 1.9e-57 227.3 343 39.9
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 4.2e-57 226.1 221 48.4
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 2.1e-56 223.8 222 52.3
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 4.3e-54 216.1 186 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 4.8e-53 212.6 376 34.6
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 4.8e-53 212.6 184 55.4
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.8e-52 210.7 186 57.0
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 3.9e-47 193.0 182 71.4
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 1.5e-43 181.0 315 38.4
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 1.7e-42 177.6 180 50.6
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 1.4e-41 174.5 189 47.6
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 4.3e-38 162.9 201 43.8
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 4.1e-36 156.4 107 66.4
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 8.4e-34 148.7 514 27.0
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.3e-26 124.8 107 56.1
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 2.5e-25 120.6 314 33.4
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 4.2e-25 119.8 95 63.2
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 9.4e-25 118.6 85 64.7
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.7e-24 117.1 140 47.1
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 4.6e-24 116.3 86 58.1
PRCOL_00001377 Prasinoderma coloniale HOM05D005549 ORTHO05D006771 3.4e-19 100.1 348 27.0
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 2.7e-16 90.5 67 59.7
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 6.1e-16 89.4 99 49.5
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 2.6e-14 84.0 97 46.4
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 3.7e-13 80.1 283 28.3


User provided reference genes

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