Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 4.7e-135 484.6 249 100.0
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.8e-102 374.4 278 70.5
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.3e-100 367.5 240 75.8
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 6.2e-95 351.3 237 77.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.4e-84 314.7 244 65.6
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.3e-80 302.4 244 62.7
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.2e-70 268.5 238 56.7
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.5e-69 266.9 239 54.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.7e-68 263.5 238 55.9
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.8e-68 262.3 245 55.9
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 4.9e-68 261.9 253 54.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 6.4e-68 261.5 245 55.9
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.2e-66 257.3 240 54.2
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.7e-66 256.1 247 52.6
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 2.7e-66 256.1 247 52.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 6.0e-66 255.0 244 54.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.3e-65 253.8 244 52.9
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.7e-65 253.4 238 54.6
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.7e-65 253.4 242 55.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.0e-65 252.7 238 56.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 3.9e-65 252.3 244 53.3
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 5.1e-65 251.9 233 55.4
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 6.6e-65 251.5 244 55.3
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 8.7e-65 251.1 240 52.5
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.5e-64 250.4 238 55.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 2.5e-64 249.6 239 52.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.3e-64 249.2 241 52.3
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-64 249.2 238 52.1
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 4.3e-64 248.8 239 53.1
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 5.6e-64 248.4 242 52.5
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 7.3e-64 248.1 229 55.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.3e-63 247.3 241 51.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.6e-63 246.9 242 52.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.6e-63 245.7 236 52.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.2e-63 245.0 244 54.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.4e-62 243.8 236 51.7
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.4e-62 243.0 241 51.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.1e-62 242.7 235 52.3
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.1e-62 242.7 254 51.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.5e-61 238.8 241 49.8
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.3e-60 237.3 237 49.4
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.3e-60 237.3 222 55.0
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.7e-60 236.9 237 50.2
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.2e-60 236.5 237 47.7
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 6.4e-60 235.0 240 52.5
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 6.4e-60 235.0 231 49.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.4e-59 231.9 240 50.0
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.2e-58 230.7 239 49.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.6e-58 230.3 225 52.0
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 4.6e-58 228.8 258 47.3
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 7.9e-58 228.0 236 47.9
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.3e-57 227.3 235 49.8
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 3.9e-57 225.7 237 49.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 5.1e-57 225.3 233 50.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.6e-56 221.9 204 53.9
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 4.8e-55 218.8 220 50.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 6.2e-55 218.4 265 44.9
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 8.1e-55 218.0 238 47.5
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.9e-54 214.9 207 54.1
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 9.0e-54 214.5 198 54.5
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.0e-53 213.4 196 53.1
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 4.5e-53 212.2 249 43.8
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.7e-52 210.3 249 43.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.2e-52 209.9 219 47.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.2e-52 209.9 240 45.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 3.8e-52 209.1 249 43.4
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 3.8e-52 209.1 249 43.4
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 4.9e-52 208.8 249 43.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 4.9e-52 208.8 196 51.0
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 8.4e-52 208.0 249 43.0
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 8.4e-52 208.0 240 45.8
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.1e-51 207.6 249 43.0
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.4e-51 206.5 246 43.1
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.4e-51 206.5 246 43.1
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.2e-51 206.1 210 53.3
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 5.5e-51 205.3 242 44.6
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 9.3e-51 204.5 246 40.7
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.2e-50 204.1 246 42.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.2e-50 204.1 225 48.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.7e-50 203.0 195 50.8
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 6.0e-50 201.8 236 44.1
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.0e-49 201.1 240 43.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.3e-49 200.7 195 51.3
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.9e-48 196.8 244 44.3
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.1e-47 193.4 248 47.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 3.1e-46 189.5 245 44.5
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.5e-45 187.2 195 48.2
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.4e-44 181.4 182 53.3
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 2.7e-42 176.4 294 37.4
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 4.6e-42 175.6 199 50.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 6.0e-42 175.3 184 50.5
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 6.7e-41 171.8 238 39.9
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.5e-40 169.9 238 42.0
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.3e-40 169.1 197 46.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.6e-39 167.2 237 40.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 6.3e-39 165.2 231 43.3
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-36 157.1 236 37.7
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-36 156.8 234 38.5
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-35 154.5 232 36.6
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-35 154.1 276 38.8
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.2e-35 152.9 238 37.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.4e-35 151.4 242 36.8
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.0e-33 147.9 167 48.5
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.0e-33 147.9 155 53.5
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 9.1e-30 134.8 238 33.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-29 134.4 236 33.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-28 129.8 235 32.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-26 124.0 236 32.2
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.6e-26 122.9 226 32.3
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.7e-26 122.5 128 44.5
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 5.1e-25 119.0 108 50.0
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 6.7e-25 118.6 246 31.7
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 2.0e-24 117.1 126 49.2
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.6e-24 116.7 240 32.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 4.4e-24 115.9 201 33.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.2e-23 111.7 152 38.2
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.2e-21 107.8 147 37.4
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 5.9e-21 105.5 103 52.4
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.9e-20 103.2 115 53.0
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.6e-18 97.4 189 37.6
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.7e-18 95.9 99 49.5
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.1e-18 95.5 105 45.7
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 6.7e-17 92.0 107 43.9
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 5.7e-16 89.0 109 43.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 4.1e-14 82.8 106 40.6
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-11 74.3 71 46.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.1e-10 70.5 75 44.0
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 2.1e-10 70.5 75 44.0
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.4e-09 67.8 73 42.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.2e-08 64.7 172 32.0
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-06 58.2 120 33.3


User provided reference genes

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