Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 0.0e+00 1382.5 710 100.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.2e-299 1031.9 715 75.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.9e-291 1005.0 715 73.8
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.6e-287 991.9 713 75.2
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 3.9e-187 659.1 724 50.7
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 8.8e-187 657.9 722 49.4
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 4.4e-186 655.6 717 51.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 4.1e-184 649.0 718 52.4
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.7e-180 635.6 720 51.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 5.0e-174 615.5 721 49.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.0e-171 607.8 719 48.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.7e-170 602.1 733 49.2
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.7e-170 601.3 724 49.6
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.7e-169 600.5 724 49.6
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 9.1e-168 594.7 711 48.8
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.0e-167 593.6 719 47.7
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.8e-166 589.3 735 46.3
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 6.5e-166 588.6 720 47.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.2e-165 586.3 720 47.2
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.0e-164 581.6 724 48.8
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.0e-162 577.0 737 47.9
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 3.4e-162 576.2 718 45.7
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.7e-162 575.5 727 47.7
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 4.8e-161 572.4 728 47.7
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 8.3e-161 571.6 699 48.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 7.0e-160 568.5 739 46.1
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.1e-157 561.2 712 47.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 4.0e-155 552.7 724 45.6
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-153 546.6 726 45.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.9e-153 545.8 731 44.6
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.4e-152 543.5 718 46.4
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.6e-151 540.8 715 45.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 5.9e-151 538.9 706 44.5
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-150 537.7 754 44.3
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.3e-149 533.1 718 45.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.3e-149 532.7 729 43.6
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.2e-148 531.2 731 43.8
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.1e-148 530.4 637 48.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.4e-147 527.7 600 47.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.8e-147 527.3 681 47.0
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 3.0e-147 526.6 726 43.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.6e-146 523.5 718 44.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.6e-146 523.5 754 43.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.9e-145 519.2 742 43.1
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.1e-144 518.1 723 45.0
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.4e-144 515.8 725 43.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.5e-143 513.1 711 45.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.0e-142 510.0 728 43.5
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.9e-141 507.3 635 45.4
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.9e-141 507.3 708 41.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 4.3e-141 506.1 717 42.4
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 8.0e-140 501.9 635 45.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.4e-139 501.1 746 43.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.2e-138 498.0 719 42.1
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-137 494.6 716 42.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.2e-137 493.8 715 42.4
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.2e-137 493.8 712 43.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.2e-137 493.8 727 41.5
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.4e-136 491.1 687 44.1
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.4e-136 490.3 714 42.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 7.0e-136 488.8 716 42.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.0e-135 487.3 707 41.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.0e-135 487.3 716 42.2
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.9e-134 483.0 712 42.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.6e-132 476.5 721 40.6
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 6.2e-132 475.7 721 40.5
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.0e-130 470.7 638 43.3
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 5.8e-130 469.2 730 41.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.9e-130 468.4 538 47.8
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-129 468.0 712 40.4
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.7e-129 466.5 793 39.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 4.9e-129 466.1 720 40.6
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.1e-127 460.7 733 40.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.7e-126 457.6 720 40.7
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.1e-126 456.1 733 40.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 4.3e-125 453.0 744 40.7
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.6e-124 451.1 648 40.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.6e-124 449.9 692 41.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.0e-123 446.4 711 40.1
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 5.2e-123 446.0 584 44.2
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-122 444.1 695 40.1
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 4.4e-122 443.0 720 41.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.7e-118 431.0 671 42.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.3e-118 430.6 715 38.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.5e-117 427.9 700 40.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.6e-116 424.5 715 38.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.8e-115 421.0 712 38.9
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 7.6e-114 415.6 594 41.4
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.2e-112 409.8 596 42.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.2e-111 408.3 692 39.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 7.8e-111 405.6 702 40.3
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.0e-110 403.7 728 37.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 4.5e-106 389.8 590 42.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 6.4e-105 386.0 487 48.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.9e-104 384.4 721 37.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.8e-100 369.8 469 45.6
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.1e-96 358.6 535 39.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 5.5e-96 356.3 602 37.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 2.5e-93 347.4 364 52.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.8e-92 344.0 478 43.7
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.1e-91 340.5 510 40.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.4e-88 331.6 751 33.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.2e-87 328.6 651 35.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.2e-87 328.6 505 40.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.5e-87 327.0 815 32.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.0e-86 323.9 564 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.9e-86 323.6 733 34.2
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.9e-85 321.2 458 41.0
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.3e-84 316.2 696 33.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 6.9e-83 312.8 644 35.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-81 308.5 534 37.3
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-80 305.1 414 44.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.2e-80 302.8 372 46.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 4.3e-77 293.5 580 34.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-75 288.9 505 37.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.5e-74 285.0 666 33.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.8e-73 280.4 700 31.7
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.8e-73 280.4 700 31.7
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.6e-71 273.9 495 36.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.6e-63 247.3 676 32.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-58 231.1 339 38.1
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.4e-56 222.6 434 32.9
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 4.2e-48 197.2 272 46.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.8e-46 191.8 375 32.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.0e-46 190.7 465 31.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.7e-42 177.9 218 42.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-41 175.6 202 47.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.1e-39 168.3 243 41.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.4e-37 160.6 220 43.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.4e-37 160.6 238 43.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 5.4e-35 153.7 242 45.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.2e-34 152.5 224 41.5
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.6e-33 146.4 323 33.7
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.5e-32 144.8 226 38.5
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-31 142.5 256 39.8
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.4e-29 134.0 243 37.0
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.3e-28 132.5 195 37.4
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.4e-28 130.2 204 38.7
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.1e-27 127.5 398 29.9
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 7.0e-27 126.7 377 29.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-26 125.2 162 42.0
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.0e-25 120.6 363 29.8
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-20 105.9 335 32.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.4e-19 102.4 130 41.5
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.4e-19 100.5 106 50.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 4.6e-18 97.4 90 53.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.0e-18 97.1 71 63.4
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-17 94.4 166 38.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 7.3e-16 90.1 86 48.8
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.6e-15 89.0 246 29.7
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-15 88.6 648 24.8
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.6e-15 87.8 101 47.5
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 8.1e-15 86.7 122 41.0
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.0e-14 84.3 80 50.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.2e-14 84.0 88 50.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.8e-14 83.6 94 45.7
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.0e-13 82.0 645 22.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.6e-13 81.6 139 35.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.9e-12 77.4 156 35.9
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 6.4e-12 77.0 81 49.4
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.4e-11 75.1 235 28.1
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.9e-09 67.8 103 39.8
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.6e-08 63.9 46 58.7
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 7.3e-08 63.5 135 28.9


User provided reference genes

Program Settings