Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 5.5e-209 730.7 365 100.0
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.3e-197 690.6 365 92.1
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 5.3e-196 687.6 365 92.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.9e-195 684.1 365 92.1
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.3e-161 572.0 365 74.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.5e-155 552.0 370 73.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 3.6e-152 542.0 365 70.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.0e-151 540.4 365 70.1
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 4.4e-150 535.0 373 69.7
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.9e-149 532.3 370 71.1
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.1e-148 530.4 365 71.2
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 2.4e-148 529.3 368 69.3
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.0e-147 524.6 368 68.8
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.0e-146 523.9 365 68.5
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.3e-146 522.7 369 66.4
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 9.5e-145 517.3 366 68.0
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.2e-144 516.9 358 70.1
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.1e-144 516.2 365 67.9
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 4.7e-144 515.0 369 67.2
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 8.0e-144 514.2 369 68.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-143 513.1 367 69.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 6.8e-143 511.1 367 66.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 6.8e-143 511.1 368 68.5
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.5e-142 510.0 370 67.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.5e-142 510.0 365 66.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 5.8e-142 508.1 371 67.1
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 7.5e-142 507.7 372 65.6
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.2e-141 506.1 371 66.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 6.4e-141 504.6 365 68.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.4e-140 502.7 365 67.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 3.2e-140 502.3 370 66.5
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 3.2e-140 502.3 378 67.2
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-138 497.3 368 69.0
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.3e-138 496.9 368 65.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.7e-138 496.5 368 68.8
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.9e-138 495.4 368 68.5
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.6e-138 494.6 368 68.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.6e-138 494.6 368 68.8
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 6.6e-138 494.6 375 66.4
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 5.6e-137 491.5 369 65.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 9.5e-137 490.7 377 63.1
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.1e-135 487.3 377 64.7
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.4e-135 486.9 371 64.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.3e-135 486.1 373 63.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.2e-135 485.0 373 64.3
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.9e-135 484.2 373 64.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-134 483.4 368 67.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.6e-134 482.6 365 62.5
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 5.8e-134 481.5 365 65.2
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 5.8e-134 481.5 383 61.6
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.9e-133 479.2 374 63.6
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.4e-133 478.0 373 63.5
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.1e-132 477.2 370 62.7
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.9e-132 476.5 372 62.6
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 3.2e-132 475.7 370 62.7
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.6e-131 473.4 374 63.1
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.6e-131 473.4 371 62.0
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.7e-131 472.6 371 61.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 6.6e-130 468.0 365 61.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.5e-129 466.8 373 61.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.3e-129 465.7 371 63.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.2e-128 463.8 372 60.8
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 2.8e-128 462.6 367 61.0
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 2.8e-128 462.6 367 61.0
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.1e-127 460.7 367 60.8
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.5e-126 456.8 368 60.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.4e-126 455.7 365 62.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.4e-126 455.3 374 61.2
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 7.6e-126 454.5 367 60.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.8e-125 452.2 374 60.7
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-124 450.7 374 60.7
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.9e-124 449.9 371 59.3
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.4e-124 449.5 367 62.1
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.0e-122 444.1 366 63.1
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.9e-122 442.2 372 61.0
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 9.6e-121 437.6 350 59.4
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.8e-120 436.0 366 58.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.8e-120 436.0 370 61.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.6e-120 435.6 379 60.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.6e-120 435.6 373 58.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-119 433.3 373 60.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.0e-119 432.2 371 61.2
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 5.3e-119 431.8 374 58.6
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 6.9e-119 431.4 371 60.9
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 9.9e-118 427.6 374 58.0
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.3e-117 427.2 353 58.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.3e-117 427.2 372 59.1
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.9e-117 426.0 376 59.6
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 3.8e-117 425.6 369 60.2
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-116 423.7 367 59.4
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 4.2e-116 422.2 385 57.4
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.2e-115 420.6 368 58.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.7e-114 416.8 370 58.9
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.3e-113 412.5 363 58.7
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.3e-113 411.4 372 54.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-111 406.8 368 57.6
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.2e-110 404.1 357 58.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 4.5e-110 402.1 366 56.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.9e-109 399.4 372 55.4
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.8e-109 399.1 359 54.3
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 3.8e-109 399.1 383 54.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.3e-105 385.6 369 53.4
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 8.4e-101 371.3 366 51.9
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.3e-95 352.1 336 53.9
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 6.9e-95 351.7 336 53.9
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.7e-93 347.1 456 42.3
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 8.2e-88 328.2 369 47.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.3e-85 320.9 369 46.6
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.4e-84 317.4 364 45.6
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.7e-83 313.2 294 53.1
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 7.9e-83 311.6 376 44.4
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.9e-82 309.3 270 57.4
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.6e-78 296.6 355 45.6
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.4e-71 274.2 342 44.7
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.5e-69 265.4 345 43.2
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 3.3e-65 253.1 370 39.7
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 4.1e-63 246.1 370 38.6
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 5.3e-63 245.7 231 56.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 4.7e-59 232.6 199 57.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.4e-57 226.1 182 59.9
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 2.7e-54 216.9 202 49.5
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 5.9e-54 215.7 173 62.4
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 6.1e-51 205.7 356 34.6
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.3e-48 195.3 289 38.8
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 6.1e-43 179.1 163 54.0
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 2.4e-39 167.2 153 52.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.0e-38 164.1 299 30.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-38 162.9 132 56.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.0e-37 160.2 132 56.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-35 154.5 132 56.1
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 2.9e-32 143.7 246 42.7
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 3.6e-27 126.7 104 59.6
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 6.2e-27 125.9 95 55.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.1e-26 125.2 95 55.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.1e-26 123.6 95 54.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 4.0e-26 123.2 112 54.5
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.9e-24 117.1 95 53.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-23 115.2 100 52.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.7e-22 110.5 286 25.5
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 3.5e-22 110.2 95 64.2
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.8e-18 97.8 93 52.7
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.8e-18 97.8 93 52.7
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 5.2e-18 96.3 108 50.9
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.2e-17 95.1 72 54.2
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.5e-14 83.6 79 57.0
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.1e-13 79.7 65 61.5
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 8.6e-13 79.0 45 84.4
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.1e-12 78.6 77 49.4
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.7e-11 73.2 59 59.3
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 4.0e-10 70.1 58 58.6


User provided reference genes

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