Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1683.3 1059 100.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 0.0e+00 1182.9 1066 77.7
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 0.0e+00 1176.8 1066 77.7
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1086.2 1037 76.3
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 4.6e-309 1064.7 1032 75.3
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 3.8e-194 682.9 1075 55.9
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.1e-190 671.4 1075 55.9
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.1e-176 624.0 1077 54.8
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 6.1e-176 622.5 1079 53.7
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 7.4e-174 615.5 1086 53.3
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 9.7e-174 615.1 1046 55.1
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.7e-173 614.4 1108 52.6
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.0e-166 590.9 1052 53.9
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.7e-163 580.5 1109 51.2
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 8.0e-160 568.9 1021 54.1
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.0e-159 568.5 1054 52.8
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 3.1e-156 557.0 1060 52.1
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.4e-156 556.2 1030 51.7
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.4e-148 530.8 1051 44.2
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 3.5e-147 526.9 1056 51.3
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 2.3e-146 524.2 1090 50.4
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 9.8e-142 508.8 1077 47.0
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 4.9e-141 506.5 1067 50.0
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.7e-138 498.0 965 48.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 6.6e-138 496.1 1074 50.1
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 8.6e-138 495.7 1067 50.2
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.5e-137 494.2 1040 50.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.6e-136 490.3 1056 50.0
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.1e-135 488.8 1067 49.4
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 7.5e-134 482.6 1084 49.1
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 7.5e-134 482.6 1085 49.3
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 2.2e-133 481.1 1070 49.4
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 9.2e-132 475.7 1080 48.4
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 3.9e-130 470.3 1047 49.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 6.6e-130 469.5 1087 48.2
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.0e-126 458.0 1061 49.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 9.9e-126 455.7 1077 47.9
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 3.9e-122 443.7 1070 40.5
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.6e-120 438.3 1050 48.1
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 2.9e-117 427.6 909 48.8
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.1e-116 422.9 1111 45.3
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.2e-115 422.2 1112 45.3
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 2.7e-115 421.0 1072 46.1
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.5e-115 420.6 1073 47.0
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.5e-113 415.2 1062 45.2
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 3.3e-113 414.1 1006 48.5
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.1e-112 411.4 1070 46.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 8.1e-112 409.5 1054 46.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.4e-111 408.7 1080 46.5
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 2.4e-111 407.9 1055 47.0
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.1e-111 407.5 1070 46.4
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.1e-111 407.5 1027 47.0
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 4.0e-111 407.1 1010 46.8
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 4.0e-111 407.1 1058 46.0
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 6.9e-111 406.4 1026 47.0
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 9.0e-111 406.0 1005 48.1
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 2.0e-110 404.8 1025 46.5
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.0e-110 404.8 1066 47.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 5.8e-110 403.3 1079 44.5
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.7e-109 401.7 1026 46.9
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.8e-109 400.6 770 53.5
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 8.4e-109 399.4 1074 45.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 8.4e-109 399.4 1059 46.9
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.4e-108 397.9 1037 46.3
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 5.4e-108 396.7 1038 45.8
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.5e-107 394.0 1071 46.2
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 3.5e-107 394.0 1039 45.4
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 7.8e-107 392.9 1040 48.1
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 2.3e-106 391.3 1050 46.9
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.3e-104 385.6 1004 47.3
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 9.9e-102 375.9 1088 44.4
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 3.8e-101 374.0 1075 44.0
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 4.2e-100 370.5 1035 46.3
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 5.1e-98 363.6 932 45.5
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.1e-98 363.6 738 50.8
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.6e-94 351.3 962 42.9
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.8e-94 350.1 630 60.0
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.4e-93 346.7 1009 45.6
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.5e-92 344.7 1064 43.9
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.5e-89 335.5 1055 43.3
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.5e-89 335.5 1037 44.0
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 3.3e-89 334.3 531 63.3
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.1e-88 331.6 1051 43.4
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.1e-87 329.3 1064 42.2
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.0e-86 325.1 1099 42.2
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 2.6e-86 324.7 768 53.1
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 1.3e-85 322.4 1070 41.9
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.5e-84 317.0 1082 41.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 9.3e-84 316.2 779 51.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.2e-83 315.8 623 51.5
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 2.7e-83 314.7 1080 42.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.7e-82 310.1 717 53.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.1e-81 309.3 1060 43.3
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.3e-80 305.8 1076 42.9
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 7.9e-75 286.6 865 46.6
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 3.7e-72 277.7 686 43.9
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.8e-58 229.9 376 65.7
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 5.3e-55 220.7 288 81.9
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.6e-54 218.4 708 42.2
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 7.7e-54 216.9 232 50.0
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.7e-53 215.7 662 46.7
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.5e-49 202.6 270 43.3
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 2.2e-45 188.7 741 41.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 9.4e-44 183.3 179 49.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.5e-41 176.0 123 68.3
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 2.8e-40 171.8 327 59.3
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.6e-30 139.4 318 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 1.9e-28 132.5 617 48.1
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-26 126.3 185 40.0
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-23 116.3 174 39.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 7.0e-23 114.0 109 52.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.2e-23 113.6 187 37.4
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 2.0e-22 112.5 93 53.8
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.0e-21 110.2 94 53.2
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.1e-19 100.5 101 42.6
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.8e-18 97.4 102 39.2
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.8e-18 97.4 186 31.7
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-15 89.7 100 71.0
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 1.3e-13 83.2 141 39.7
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 3.3e-12 78.6 642 42.4
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.1e-11 75.9 77 49.4
SMO286G0011 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.2e-08 65.9 63 50.8
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.7e-08 65.1 80 50.0
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.4e-07 62.4 81 42.0
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.2e-07 62.0 73 46.6
SMO360G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 5.4e-07 61.2 91 40.7
SMO245G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.1e-07 60.8 91 40.7
SMO116G0249 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 9.2e-07 60.5 89 40.4
SMO245G0007 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 9.2e-07 60.5 89 41.6
SMO347G0269 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 9.2e-07 60.5 63 49.2
SMO274G0022 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.2e-06 60.1 61 50.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.6e-06 59.7 123 27.6
SMO060G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.6e-06 58.2 63 47.6
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 6.0e-06 57.8 45 66.7


User provided reference genes

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