Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 0.0e+00 1160.2 638 100.0
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.1e-256 889.0 640 74.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.0e-252 874.0 639 74.6
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.1e-252 873.6 645 74.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 3.0e-117 426.8 693 41.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.3e-116 423.3 676 44.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.1e-111 408.3 659 42.2
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.2e-111 405.2 722 41.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.3e-109 400.6 662 41.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.0e-109 400.2 713 40.7
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.0e-109 400.2 702 40.0
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.9e-108 397.5 670 41.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.2e-107 394.8 683 41.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.6e-107 394.4 663 41.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.8e-107 393.7 718 40.1
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 4.0e-106 389.8 689 40.8
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 8.9e-106 388.7 674 42.4
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.9e-106 388.7 674 40.2
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-105 388.3 734 39.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.5e-105 387.9 663 40.9
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.0e-105 387.5 692 40.6
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.6e-105 387.1 713 39.4
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.4e-105 386.3 713 39.1
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.3e-104 384.8 686 40.2
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 4.9e-104 382.9 703 39.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.4e-104 382.5 695 40.1
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-103 380.6 704 39.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.2e-102 378.3 662 39.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.1e-102 377.5 682 38.7
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 7.8e-102 375.6 672 40.6
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.1e-100 371.7 668 41.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.9e-100 370.9 677 38.6
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 9.5e-100 368.6 728 39.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.1e-99 367.5 593 46.5
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.4e-98 364.8 682 40.3
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 4.0e-98 363.2 686 39.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.6e-97 360.5 674 39.3
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.4e-97 360.1 715 38.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.4e-95 354.8 692 38.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.5e-94 350.1 716 37.4
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 8.7e-93 345.5 655 39.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 8.7e-93 345.5 671 39.0
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.7e-93 345.5 604 40.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.5e-92 344.0 687 38.4
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.3e-92 343.2 693 37.1
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.6e-91 341.3 670 39.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-90 338.6 692 37.7
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 4.0e-90 336.7 722 36.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.0e-89 334.3 671 38.2
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.9e-88 329.7 686 35.4
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.1e-87 325.9 709 36.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 9.3e-87 325.5 728 36.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.2e-86 325.1 698 36.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 7.8e-86 322.4 699 36.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 7.8e-86 322.4 730 35.1
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.8e-86 322.4 652 36.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.7e-85 321.2 734 37.9
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.3e-85 320.9 675 36.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.5e-84 318.2 669 36.8
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 3.3e-84 317.0 665 37.6
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 7.3e-84 315.8 663 37.6
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.8e-83 313.9 751 34.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.2e-83 312.8 679 38.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.8e-82 311.2 649 36.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 6.9e-82 309.3 685 36.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 9.9e-81 305.4 669 38.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.2e-80 304.3 668 36.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.1e-79 302.0 668 35.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.2e-79 300.4 745 33.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.2e-79 300.1 799 36.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 5.4e-79 299.7 667 37.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 5.4e-79 299.7 704 35.8
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 9.3e-79 298.9 670 35.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-78 297.7 710 38.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-78 297.7 695 37.3
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.1e-77 293.1 778 32.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.1e-77 293.1 656 32.9
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 8.7e-77 292.4 712 37.6
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.1e-74 283.9 659 34.3
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.9e-74 282.7 680 36.2
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.2e-72 277.7 606 35.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.9e-72 277.3 707 34.1
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.4e-72 275.8 729 32.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 8.4e-72 275.8 674 35.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.4e-71 275.0 687 33.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.4e-71 275.0 675 34.7
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.7e-70 270.8 686 33.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.8e-69 268.1 824 30.3
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.8e-69 268.1 817 29.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.1e-69 266.5 702 33.5
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.7e-69 265.8 669 35.4
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.3e-68 263.5 670 34.2
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.7e-64 251.5 783 29.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-64 251.1 671 33.8
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 4.9e-64 250.0 566 35.7
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-63 248.8 642 32.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.9e-63 248.1 682 32.4
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.6e-62 245.0 709 31.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.7e-62 244.2 565 36.3
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.8e-61 241.5 631 32.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.0e-61 240.7 856 30.3
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.5e-60 237.7 647 30.9
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.7e-60 236.5 644 33.7
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 9.7e-60 235.7 858 30.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.3e-59 235.3 829 29.9
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.8e-59 234.2 621 32.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.8e-59 234.2 748 33.3
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 4.8e-59 233.4 633 31.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.8e-59 233.4 871 29.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.1e-58 230.3 660 35.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.4e-57 227.3 645 32.1
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.5e-57 226.9 633 32.1
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 4.5e-57 226.9 702 30.3
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-55 222.2 177 67.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.6e-54 218.4 928 26.4
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.6e-54 218.4 680 30.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 7.9e-54 216.1 658 30.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.1e-53 213.4 700 30.9
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.9e-50 203.0 586 32.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.0e-49 201.4 694 28.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.7e-43 180.6 808 26.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.7e-38 164.5 863 26.2
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.7e-35 154.1 270 35.6
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.4e-34 151.4 219 37.9
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 4.1e-34 150.6 742 26.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 9.1e-34 149.4 523 29.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 4.5e-33 147.1 436 35.3
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 7.7e-33 146.4 659 29.0
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-32 145.6 616 27.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 3.8e-32 144.1 311 40.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.5e-32 142.9 301 38.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.4e-31 139.4 354 32.2
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.0e-29 136.0 307 39.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.0e-29 136.0 412 32.0
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.3e-29 134.8 638 29.2
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.0e-29 134.0 187 40.1
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.4e-28 130.6 311 37.0
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.5e-25 120.6 168 45.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.5e-24 116.7 131 46.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.8e-21 108.6 453 29.6
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.3e-21 108.2 176 42.0
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 8.8e-21 106.3 348 31.3
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 9.8e-20 102.8 348 32.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 4.1e-18 97.4 330 30.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 7.0e-18 96.7 370 33.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.9e-16 91.3 681 27.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.6e-14 85.5 83 50.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.8e-14 84.7 115 42.6
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 4.0e-13 80.9 335 31.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.4e-12 77.4 353 27.8
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.7e-12 77.0 105 49.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 5.7e-12 77.0 179 33.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 7.5e-12 76.6 87 44.8
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.2e-11 75.1 160 38.1
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 4.1e-10 70.9 78 51.3
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 9.2e-10 69.7 87 48.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-09 69.3 139 34.5
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.3e-08 65.9 88 42.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-08 65.5 139 33.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.1e-07 62.8 401 26.9
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-07 62.0 228 30.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-06 59.3 78 44.9
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.8e-06 58.2 60 46.7


User provided reference genes

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