Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.2e-236 822.0 451 100.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 7.0e-206 720.7 450 83.6
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.9e-204 715.3 450 82.9
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 4.1e-190 668.3 439 81.5
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.0e-160 569.7 456 67.1
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.7e-159 566.6 456 66.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.7e-159 566.6 456 66.2
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.8e-159 565.5 456 66.2
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.1e-154 549.7 456 68.9
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.4e-153 547.0 451 64.1
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.0e-153 545.4 453 63.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 5.3e-153 545.0 453 64.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.6e-152 542.7 446 63.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 4.5e-152 542.0 475 62.9
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 7.6e-152 541.2 452 66.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 7.6e-152 541.2 464 64.2
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.7e-151 540.0 455 63.7
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-150 537.3 407 69.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.4e-150 537.0 411 68.6
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.9e-150 536.6 452 63.7
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 7.1e-150 534.6 451 63.2
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.1e-149 533.1 452 64.4
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.6e-149 531.9 452 63.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.0e-148 529.3 453 67.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 5.6e-147 525.0 431 65.2
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.1e-146 523.1 418 64.8
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 3.7e-146 522.3 478 60.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 8.1e-146 521.2 452 61.5
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 4.0e-145 518.8 451 62.5
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 4.0e-145 518.8 409 68.0
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 9.0e-145 517.7 419 65.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-144 516.9 469 59.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.6e-144 516.2 369 72.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 3.4e-144 515.8 450 62.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 4.5e-144 515.4 462 61.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.5e-144 515.4 421 65.6
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.9e-144 514.2 472 59.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.7e-143 513.5 437 63.2
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.2e-143 513.1 372 71.5
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 3.8e-143 512.3 452 61.5
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 3.8e-143 512.3 453 60.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.2e-142 509.2 377 70.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.7e-141 506.1 377 68.4
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.6e-141 505.4 425 63.1
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 7.9e-141 504.6 437 61.6
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-140 503.8 443 61.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.3e-140 503.1 410 64.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.3e-140 503.1 440 60.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.7e-140 501.1 443 60.9
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.1e-139 500.7 465 60.0
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.9e-139 500.0 445 60.0
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 5.6e-139 498.4 352 73.0
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.6e-139 498.4 404 65.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.8e-138 495.4 424 63.2
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 4.8e-138 495.4 425 63.5
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 8.2e-138 494.6 451 59.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.4e-137 493.8 424 63.0
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.8e-137 493.4 423 63.1
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.4e-137 493.0 452 59.5
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.5e-136 490.3 418 67.5
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.4e-136 489.2 418 62.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.4e-136 489.2 457 58.9
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.8e-136 488.4 409 63.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.2e-135 486.5 422 61.4
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.8e-135 485.7 379 67.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 4.9e-135 485.3 453 59.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.1e-134 484.2 323 73.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.2e-134 482.6 448 57.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 4.2e-134 482.3 459 57.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 7.9e-133 478.0 453 62.3
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.3e-132 477.2 473 61.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.8e-132 476.9 453 56.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 6.7e-132 474.9 469 56.3
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.1e-131 474.2 453 57.0
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.1e-131 474.2 387 64.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 7.4e-131 471.5 323 72.4
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.3e-130 470.7 410 61.2
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 2.8e-130 469.5 416 59.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 3.7e-130 469.2 378 64.6
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.2e-128 464.2 419 58.2
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.5e-128 463.8 509 51.7
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.0e-128 463.4 404 63.4
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.3e-127 460.7 481 52.4
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 8.5e-127 458.0 341 68.0
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.4e-126 457.2 461 54.2
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.5e-126 456.4 453 55.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.2e-126 455.7 454 54.8
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 5.5e-126 455.3 414 58.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 5.5e-126 455.3 378 63.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-125 453.8 402 60.2
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.6e-125 453.8 404 59.4
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.0e-124 451.1 492 54.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.8e-124 450.3 424 56.8
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.7e-123 444.5 459 53.6
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.3e-122 444.1 457 54.9
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.3e-122 444.1 460 54.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-122 443.0 401 57.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 3.7e-122 442.6 457 54.9
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 6.3e-122 441.8 412 57.5
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 8.2e-122 441.4 332 68.7
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 6.9e-121 438.3 448 53.6
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 4.5e-120 435.6 321 68.8
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.7e-119 433.7 422 57.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 6.5e-119 431.8 462 53.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.4e-118 430.6 423 54.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 2.5e-118 429.9 379 62.8
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-117 427.2 424 55.2
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.6e-117 426.0 413 54.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.3e-116 423.3 413 54.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.0e-116 422.9 409 56.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 5.1e-116 422.2 426 55.6
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 5.1e-116 422.2 426 55.6
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 6.7e-116 421.8 409 56.5
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.0e-115 420.2 322 67.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.3e-115 419.5 487 51.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-115 418.7 376 58.2
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-113 412.5 453 50.8
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-110 404.1 453 49.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.5e-110 402.1 482 51.0
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 5.5e-110 402.1 340 57.9
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.5e-107 394.0 356 59.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-107 392.5 264 74.6
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 4.5e-104 382.5 517 45.5
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-103 381.3 307 63.8
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.7e-103 380.6 408 51.7
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.7e-103 380.6 407 48.9
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.5e-102 375.6 449 49.4
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 7.2e-102 375.2 414 50.7
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.1e-101 373.6 329 57.1
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.1e-101 373.6 277 68.6
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 3.7e-98 362.8 318 55.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.2e-96 357.8 361 53.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.0e-95 354.8 419 48.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 4.0e-92 342.8 302 61.3
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-91 339.7 407 48.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 5.7e-91 339.0 408 48.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.1e-89 333.2 405 47.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 4.1e-89 332.8 374 48.7
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.0e-88 330.5 405 47.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.8e-87 326.2 414 46.1
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-84 318.2 350 50.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.0e-84 318.2 318 49.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-83 313.2 432 44.9
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-80 304.7 369 47.2
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-80 304.3 369 47.2
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.1e-78 298.1 356 49.2
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-76 290.0 356 46.6
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.2e-74 283.9 206 70.4
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 3.2e-73 280.0 281 55.9
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.7e-72 276.9 367 45.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 4.0e-60 236.5 169 72.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.0e-60 236.5 323 42.7
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 6.8e-60 235.7 168 72.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.4e-50 202.6 153 65.4
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.7e-47 194.5 200 51.5
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.8e-45 187.2 125 68.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 6.0e-40 169.5 145 62.8
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 9.0e-36 155.6 94 78.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 7.1e-33 146.0 166 50.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.9e-30 137.9 159 49.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.4e-27 127.1 139 52.5
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 3.4e-27 127.1 119 55.5
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.9e-26 124.0 84 70.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 9.3e-25 119.0 98 59.2
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-23 115.2 92 63.0
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 8.7e-23 112.5 92 59.8
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.5e-22 110.9 99 57.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 4.3e-22 110.2 307 31.9
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 3.5e-16 90.5 145 44.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-14 85.5 114 45.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.5e-14 84.3 58 72.4
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 5.7e-14 83.2 149 40.9
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.1e-12 79.0 122 43.4
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 5.3e-12 76.6 54 63.0
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 5.3e-12 76.6 54 63.0
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.5e-11 75.1 72 58.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 7.7e-11 72.8 209 28.7
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.0e-10 72.4 57 68.4
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 2.9e-10 70.9 49 65.3
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 5.0e-10 70.1 96 39.6
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.8e-07 61.6 96 36.5
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 8.8e-07 59.3 89 43.8


User provided reference genes

Program Settings