Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.4e-142 508.8 258 100.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 8.9e-89 330.9 223 75.8
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.0e-88 329.7 221 74.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 7.6e-88 327.8 223 74.9
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 3.3e-75 285.8 221 66.1
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.3e-71 273.9 224 62.9
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 9.3e-70 267.7 206 64.6
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 8.7e-68 261.2 218 60.1
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.3e-66 257.3 223 60.5
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 2.8e-66 256.1 213 59.6
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.8e-66 256.1 195 64.1
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.4e-65 253.1 220 59.5
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.1e-65 252.7 217 59.9
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.2e-64 250.8 218 57.8
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 2.0e-64 250.0 219 60.3
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 2.6e-64 249.6 222 56.8
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 2.6e-64 249.6 203 61.1
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 3.4e-64 249.2 215 58.6
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 5.8e-64 248.4 226 57.1
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.7e-63 246.9 222 56.8
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.9e-63 246.1 218 57.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.8e-63 245.7 226 57.1
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 8.4e-63 244.6 226 56.2
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 9.3e-62 241.1 212 59.4
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.6e-61 240.4 214 57.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.7e-61 239.6 223 55.6
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.5e-61 239.2 213 58.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 6.0e-61 238.4 195 60.5
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.3e-60 237.3 227 53.7
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.8e-60 236.9 225 55.6
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.3e-60 236.5 215 58.1
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.0e-60 236.1 194 59.3
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.0e-60 236.1 213 57.7
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.1e-60 235.3 221 55.2
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 6.7e-60 235.0 222 55.0
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-59 234.2 215 59.1
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.5e-59 233.8 211 57.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.9e-59 233.4 215 58.6
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.5e-59 233.0 195 61.5
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 5.6e-59 231.9 221 55.7
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.6e-59 231.9 216 55.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.6e-58 230.3 226 56.2
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.6e-58 230.3 226 56.2
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.8e-58 229.6 214 52.3
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 8.1e-58 228.0 210 56.2
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.1e-57 227.6 229 53.7
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.1e-57 227.6 224 55.4
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.8e-57 226.9 195 57.9
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.1e-57 226.1 227 52.9
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 5.3e-57 225.3 219 53.0
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 9.0e-57 224.6 208 53.4
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.5e-56 223.8 232 53.0
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 4.5e-56 222.2 218 54.6
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.5e-56 222.2 228 53.5
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 7.6e-56 221.5 202 58.9
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 7.6e-56 221.5 214 53.3
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-55 220.7 228 51.8
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-55 220.7 214 54.7
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.2e-55 219.9 221 54.8
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.9e-55 219.5 193 55.4
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.9e-55 219.5 218 53.2
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.8e-55 219.2 216 54.6
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 6.5e-55 218.4 220 50.0
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 3.2e-54 216.1 222 51.4
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 5.5e-54 215.3 227 50.2
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 5.5e-54 215.3 227 50.2
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 5.5e-54 215.3 197 58.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 5.5e-54 215.3 193 55.4
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.1e-54 214.9 197 54.8
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.2e-53 214.2 225 50.7
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-53 214.2 216 51.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-53 214.2 216 51.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.2e-53 214.2 216 51.4
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.2e-53 214.2 225 51.1
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.6e-53 213.8 219 50.2
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 2.1e-53 213.4 221 51.1
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.1e-53 213.4 220 51.8
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 2.7e-53 213.0 202 54.5
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.5e-53 212.6 208 51.4
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 7.9e-53 211.5 228 52.2
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.3e-52 209.9 227 54.6
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.0e-52 209.5 229 49.3
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.0e-52 209.5 229 49.3
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.0e-52 209.5 229 49.3
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.0e-52 209.5 219 52.1
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 3.9e-52 209.1 219 52.5
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.1e-51 207.6 215 50.2
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 7.4e-51 204.9 222 49.5
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.6e-51 204.5 227 52.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 9.6e-51 204.5 220 52.3
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 3.7e-50 202.6 236 50.0
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 4.8e-50 202.2 229 48.9
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.8e-50 202.2 224 47.8
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.8e-50 202.2 224 47.8
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 6.3e-50 201.8 224 50.9
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.8e-49 200.3 217 51.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.1e-49 199.1 224 50.4
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 5.3e-49 198.7 217 46.5
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 6.9e-49 198.4 159 59.7
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 9.0e-49 198.0 224 50.0
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 1.5e-48 197.2 224 50.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.5e-48 197.2 211 50.2
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.0e-48 196.8 202 51.5
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.9e-48 195.3 199 51.8
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.0e-47 194.5 215 47.4
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.2e-47 193.4 224 47.3
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 2.9e-47 193.0 257 42.4
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 5.0e-47 192.2 214 49.1
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.9e-46 190.3 170 58.8
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.2e-46 189.1 199 50.8
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.3e-44 184.1 212 45.8
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.1e-44 182.2 224 43.8
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.5e-43 179.9 210 44.3
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.7e-43 177.9 219 42.5
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.3e-42 177.6 217 44.2
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 2.8e-42 176.4 217 44.2
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.8e-42 176.4 224 45.1
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 3.7e-42 176.0 224 45.1
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.3e-42 175.3 215 46.0
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.4e-41 174.1 220 41.8
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.1e-41 172.6 210 45.7
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 5.3e-41 172.2 194 47.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.3e-39 167.5 145 58.6
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.3e-39 167.5 214 44.9
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.7e-39 167.2 218 45.9
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.5e-39 165.2 209 42.6
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 9.4e-38 161.4 196 44.4
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.2e-37 161.0 203 42.4
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.7e-37 159.8 220 40.0
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.6e-37 159.1 202 41.6
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 6.1e-37 158.7 201 41.3
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.0e-36 157.9 223 41.3
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 3.0e-36 156.4 201 40.3
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 3.0e-36 156.4 201 40.3
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.1e-36 155.6 215 40.5
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 6.7e-36 155.2 158 53.2
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.1e-35 154.5 200 43.0
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.5e-35 154.1 215 40.0
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 2.0e-35 153.7 165 50.3
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.3e-35 152.9 243 39.1
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.3e-35 152.5 215 40.0
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.7e-35 152.1 227 41.0
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.3e-34 151.0 147 51.7
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.8e-34 149.8 190 41.6
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.1e-33 146.0 213 39.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.3e-33 145.6 211 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.0e-32 143.7 210 38.6
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.0e-32 143.7 193 41.5
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 2.6e-32 143.3 202 40.1
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.4e-30 137.5 158 48.1
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 2.5e-30 136.7 224 37.9
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 4.5e-24 115.9 205 35.6
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 2.5e-22 110.2 198 33.8
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.2e-15 87.0 68 57.4
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 5.0e-15 85.9 67 59.7
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.9e-14 84.0 117 44.4
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 4.2e-14 82.8 72 56.9
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.7e-13 80.1 67 55.2
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.6e-13 79.7 68 57.4
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.3e-12 77.0 68 55.9
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 3.0e-12 76.6 66 62.1
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 8.8e-12 75.1 68 57.4
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-11 73.9 67 49.3
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.6e-11 73.6 68 54.4
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 2.6e-11 73.6 54 63.0
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.3e-10 68.6 67 52.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.8e-09 67.4 56 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.5e-08 62.8 79 41.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 5.0e-07 59.3 67 46.3
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 4.2e-06 56.2 56 42.9


User provided reference genes

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