Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 2.0e-245 852.0 453 100.0
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 1.4e-217 759.6 453 89.0
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 3.0e-217 758.4 453 88.5
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 8.7e-180 634.0 459 74.7
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 7.6e-176 620.9 455 73.8
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 2.4e-174 615.9 452 73.7
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 6.6e-172 607.8 456 70.0
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 9.9e-168 594.0 450 70.9
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 1.9e-166 589.7 456 69.3
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.9e-166 589.7 455 69.5
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 2.4e-166 589.3 465 68.0
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 3.5e-165 585.5 338 89.3
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.0e-164 583.9 458 70.3
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.4e-161 573.5 453 68.2
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.4e-161 573.5 456 70.6
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.1e-158 563.9 441 66.4
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 9.3e-158 560.8 455 67.9
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 8.7e-156 554.3 458 67.7
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.3e-155 552.4 479 64.1
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 1.3e-154 550.4 416 70.0
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.1e-154 549.7 458 67.2
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 6.2e-154 548.1 472 65.0
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.9e-153 544.7 458 66.6
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 2.6e-152 542.7 470 66.0
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 4.5e-152 542.0 456 67.1
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 5.8e-152 541.6 455 66.6
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 5.8e-152 541.6 418 67.2
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 1.7e-151 540.0 443 65.0
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 2.2e-151 539.7 519 58.8
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 8.4e-151 537.7 456 64.7
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.5e-150 536.2 453 65.3
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 4.2e-150 535.4 456 65.1
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 7.9e-149 531.2 460 65.2
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 5.1e-148 528.5 452 63.9
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.3e-147 525.8 396 73.0
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 2.4e-145 519.6 458 61.6
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.8e-140 503.4 456 62.1
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 8.8e-140 501.1 455 60.2
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 8.8e-140 501.1 457 62.4
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 1.1e-139 500.7 459 63.0
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 5.7e-139 498.4 460 62.0
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 7.4e-139 498.0 459 62.7
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 3.7e-138 495.7 459 62.5
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 8.2e-138 494.6 455 61.3
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.4e-137 493.8 473 60.7
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 3.1e-137 492.7 460 60.7
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.1e-137 492.3 474 60.8
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 3.4e-136 489.2 457 59.7
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 4.5e-136 488.8 484 57.2
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.0e-135 487.6 399 66.4
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 1.3e-135 487.3 468 61.5
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-135 487.3 473 60.5
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 2.5e-134 483.0 320 75.6
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 5.5e-134 481.9 454 59.0
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 3.6e-133 479.2 468 60.9
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 7.9e-133 478.0 459 60.6
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.4e-132 477.2 459 60.8
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 2.3e-132 476.5 313 76.0
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 6.7e-132 474.9 463 61.6
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 8.8e-132 474.6 454 58.8
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 8.8e-132 474.6 457 58.6
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 9.7e-131 471.1 472 60.2
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.8e-130 469.5 457 56.0
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 6.3e-130 468.4 455 58.9
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 2.0e-128 463.4 389 64.3
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 6.7e-124 448.4 466 59.7
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 4.4e-123 445.7 452 58.4
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 1.7e-122 443.7 470 56.4
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.8e-121 440.3 459 57.5
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 5.3e-121 438.7 457 56.7
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 9.1e-121 438.0 441 54.6
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.6e-120 436.4 470 57.7
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.0e-119 434.5 457 56.9
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.3e-119 434.1 462 56.7
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.2e-119 433.3 457 56.9
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 5.0e-119 432.2 465 57.2
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 5.0e-119 432.2 419 56.1
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.1e-118 431.0 461 56.0
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 9.4e-118 427.9 452 54.2
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 1.6e-117 427.2 345 65.5
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 6.1e-117 425.2 391 61.4
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 8.0e-117 424.9 344 65.1
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 7.5e-115 418.3 452 53.5
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 6.5e-111 405.2 250 79.6
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 9.4e-110 401.4 412 54.1
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.0e-108 397.9 519 46.2
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.9e-104 382.1 412 52.2
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 2.3e-103 380.2 380 57.1
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 8.6e-103 378.3 349 58.5
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 1.6e-101 374.0 391 54.5
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 5.7e-99 365.5 391 54.0
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 4.4e-91 339.3 439 50.1
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 5.8e-91 339.0 276 65.2
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 9.8e-91 338.2 421 50.1
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 1.2e-85 321.2 373 50.7
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.6e-85 320.9 491 44.2
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.7e-80 303.5 481 43.0
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 7.3e-78 295.4 468 39.5
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.8e-77 293.5 476 40.8
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.6e-70 269.2 179 74.9
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 3.3e-62 243.4 217 61.8
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.1e-61 240.7 389 45.0
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.3e-55 221.5 368 38.6
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 4.5e-51 206.5 207 49.8
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 1.3e-47 194.9 198 58.6
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.2e-35 155.2 185 44.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 7.9e-24 115.9 231 38.1
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 1.1e-22 112.1 185 41.1
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 7.4e-14 82.8 103 48.5
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.5e-11 75.1 91 45.1
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 5.9e-11 73.2 63 60.3
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 5.0e-10 70.1 67 62.7
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.5e-09 68.6 42 76.2


User provided reference genes

Program Settings