Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 5.9e-46 187.2 96 100.0
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 1.0e-34 149.8 94 83.0
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 3.1e-34 148.3 93 82.8
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 8.9e-34 146.7 95 77.9
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.9e-34 146.7 96 81.2
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.9e-34 146.7 96 81.2
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 2.0e-33 145.6 93 81.7
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 4.4e-33 144.4 93 80.6
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 5.8e-33 144.1 93 80.6
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 5.8e-33 144.1 95 77.9
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 5.8e-33 144.1 95 76.8
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 9.8e-33 143.3 95 76.8
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 1.3e-32 142.9 95 76.8
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.7e-32 142.5 95 76.8
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 2.2e-32 142.1 95 75.8
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 2.9e-32 141.7 93 77.4
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 2.9e-32 141.7 95 75.8
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 3.7e-32 141.4 112 67.0
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 3.7e-32 141.4 93 77.4
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 4.9e-32 141.0 102 75.5
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 6.4e-32 140.6 93 78.5
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 6.4e-32 140.6 94 77.7
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 8.3e-32 140.2 95 77.9
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 8.3e-32 140.2 93 77.4
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 1.4e-31 139.4 95 74.7
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.4e-31 139.4 93 77.4
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 2.4e-31 138.7 95 73.7
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 2.4e-31 138.7 92 76.1
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 2.4e-31 138.7 93 76.3
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 3.2e-31 138.3 95 73.7
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 5.4e-31 137.5 95 73.7
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 5.4e-31 137.5 93 76.3
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 7.0e-31 137.1 95 74.7
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 7.0e-31 137.1 95 73.7
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 7.0e-31 137.1 92 76.1
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 7.0e-31 137.1 95 73.7
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 9.2e-31 136.7 95 73.7
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 9.2e-31 136.7 94 75.5
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 9.2e-31 136.7 95 73.7
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 1.2e-30 136.3 91 76.9
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.6e-30 136.0 93 75.3
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.0e-30 135.6 95 73.7
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 2.7e-30 135.2 94 74.5
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 2.7e-30 135.2 95 74.7
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 3.5e-30 134.8 93 73.1
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 3.5e-30 134.8 90 76.7
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 4.6e-30 134.4 95 72.6
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 4.6e-30 134.4 91 78.0
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 4.6e-30 134.4 95 72.6
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 4.6e-30 134.4 95 73.7
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 4.6e-30 134.4 90 77.8
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 4.6e-30 134.4 90 77.8
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 4.6e-30 134.4 90 77.8
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 4.6e-30 134.4 90 76.7
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 4.6e-30 134.4 98 68.4
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 6.0e-30 134.0 95 72.6
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 7.8e-30 133.7 90 76.7
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.0e-29 133.3 93 71.0
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 1.0e-29 133.3 95 72.6
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.0e-29 133.3 95 71.6
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 1.7e-29 132.5 93 72.0
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.7e-29 132.5 90 76.7
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 1.7e-29 132.5 95 71.6
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 3.0e-29 131.7 93 72.0
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.0e-29 131.7 91 73.6
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 3.0e-29 131.7 94 74.5
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 3.0e-29 131.7 90 75.6
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 3.9e-29 131.3 90 76.7
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 3.9e-29 131.3 99 70.7
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 3.9e-29 131.3 94 70.2
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 6.6e-29 130.6 93 72.0
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 6.6e-29 130.6 95 70.5
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 8.6e-29 130.2 93 72.0
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 8.6e-29 130.2 93 72.0
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 8.6e-29 130.2 95 69.5
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 8.6e-29 130.2 95 69.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 8.6e-29 130.2 93 74.2
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 1.1e-28 129.8 93 71.0
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.5e-28 129.4 96 71.9
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.9e-28 129.0 93 71.0
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 3.3e-28 128.3 93 71.0
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 3.3e-28 128.3 93 71.0
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 3.3e-28 128.3 94 72.3
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 4.3e-28 127.9 95 70.5
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 4.3e-28 127.9 95 68.4
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 4.3e-28 127.9 94 69.1
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 4.3e-28 127.9 94 69.1
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 7.3e-28 127.1 93 69.9
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 7.3e-28 127.1 93 69.9
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 7.3e-28 127.1 93 69.9
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 7.3e-28 127.1 93 68.8
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 9.5e-28 126.7 92 68.5
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.6e-27 125.9 93 69.9
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.6e-27 125.9 93 69.9
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.6e-27 125.9 90 71.1
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 1.6e-27 125.9 93 71.0
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 2.1e-27 125.6 90 72.2
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 2.1e-27 125.6 98 67.3
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.1e-27 125.6 90 72.2
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.1e-27 125.6 90 72.2
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 2.1e-27 125.6 94 71.3
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.8e-27 125.2 97 69.1
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.1e-26 121.7 137 54.0
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.1e-26 121.7 137 54.0
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 9.8e-25 116.7 89 66.3
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.7e-24 115.9 93 64.5
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 2.2e-24 115.5 89 67.4
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 2.1e-22 109.0 55 94.5
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 5.1e-21 104.4 89 61.8
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.1e-20 103.2 79 68.4
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 1.5e-20 102.8 89 58.4
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 4.3e-20 101.3 73 72.6
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.6e-17 90.5 60 76.7
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.6e-17 90.5 60 76.7
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.6e-17 90.5 60 76.7
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 1.0e-13 80.1 94 47.9
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 2.1e-11 72.4 39 94.9
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 3.1e-10 68.6 60 61.7


User provided reference genes

Program Settings