Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 5.3e-45 184.1 102 100.0
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 1.7e-38 162.5 104 84.6
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 8.2e-38 160.2 100 86.0
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 2.4e-37 158.7 105 84.8
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 3.2e-34 148.3 100 85.0
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 2.0e-23 112.5 97 59.8
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 4.4e-23 111.3 96 59.4
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.8e-21 105.9 72 69.4
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 7.0e-21 104.0 96 56.2
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 2.7e-20 102.1 84 63.1
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 3.5e-20 101.7 84 63.1
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 4.5e-20 101.3 96 56.2
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 4.5e-20 101.3 96 55.2
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 4.5e-20 101.3 96 54.2
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 7.8e-20 100.5 95 56.8
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 7.8e-20 100.5 96 55.2
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 7.8e-20 100.5 96 55.2
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 3.8e-19 98.2 96 55.2
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 3.8e-19 98.2 85 57.6
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 8.6e-19 97.1 93 53.8
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.1e-18 96.7 98 51.0
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.5e-18 96.3 96 53.1
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.9e-18 95.9 72 61.1
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 1.9e-18 95.9 84 56.0
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 2.5e-18 95.5 75 60.0
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 2.5e-18 95.5 72 66.7
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 3.3e-18 95.1 96 52.1
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 7.3e-18 94.0 70 64.3
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 9.5e-18 93.6 96 52.1
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 9.5e-18 93.6 96 50.0
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.2e-17 93.2 96 50.0
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.6e-17 92.8 96 51.0
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 1.6e-17 92.8 66 66.7
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 2.1e-17 92.4 83 55.4
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 2.1e-17 92.4 83 55.4
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 2.1e-17 92.4 98 49.0
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.8e-17 92.0 72 58.3
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 3.6e-17 91.7 96 50.0
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 3.6e-17 91.7 96 50.0
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 3.6e-17 91.7 74 54.1
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 6.1e-17 90.9 98 49.0
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 8.0e-17 90.5 72 62.5
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.0e-16 90.1 95 51.6
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.0e-16 90.1 97 48.5
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.0e-16 90.1 95 50.5
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 1.4e-16 89.7 71 59.2
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.8e-16 89.4 80 56.2
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.8e-16 89.4 67 62.7
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 1.8e-16 89.4 70 64.3
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 5.2e-16 87.8 72 56.9
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 6.8e-16 87.4 72 55.6
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 6.8e-16 87.4 98 51.0
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 8.9e-16 87.0 67 61.2
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 8.9e-16 87.0 72 55.6
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 1.2e-15 86.7 73 58.9
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 2.0e-15 85.9 70 58.6
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.4e-15 85.1 71 56.3
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 5.8e-15 84.3 84 48.8
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 7.5e-15 84.0 96 42.7
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 7.5e-15 84.0 71 54.9
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 9.8e-15 83.6 63 60.3
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 9.8e-15 83.6 96 47.9
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.3e-14 83.2 98 50.0
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 2.2e-14 82.4 71 54.9
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 2.2e-14 82.4 71 56.3
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 2.9e-14 82.0 85 51.8
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 2.9e-14 82.0 65 64.6
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 3.7e-14 81.6 70 54.3
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 3.7e-14 81.6 72 50.0
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 4.9e-14 81.3 84 48.8
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 8.3e-14 80.5 69 53.6
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.4e-13 79.7 85 49.4
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 3.2e-13 78.6 64 62.5
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 3.2e-13 78.6 64 62.5
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 3.2e-13 78.6 86 41.9
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 4.1e-13 78.2 62 54.8
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 5.4e-13 77.8 65 55.4
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.2e-12 76.6 69 53.6
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 3.5e-12 75.1 79 50.6
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 3.5e-12 75.1 70 51.4
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 4.6e-12 74.7 72 50.0
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 6.0e-12 74.3 56 58.9
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.1e-10 70.1 50 62.0
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 3.3e-10 68.6 63 49.2
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.2e-09 66.6 53 58.5
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 6.2e-09 64.3 56 55.4
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.4e-08 63.2 85 40.0
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.2e-07 60.1 65 47.7
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.0e-07 59.3 108 40.7
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 2.6e-07 58.9 73 35.6


User provided reference genes

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