Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.9e-224 782.3 438 100.0
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 7.8e-186 654.1 438 85.2
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.0e-174 615.1 436 81.4
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.1e-171 607.1 427 81.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.1e-171 607.1 427 81.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 8.2e-151 537.7 438 70.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.4e-150 536.2 437 70.3
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.7e-148 530.0 438 69.2
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.4e-147 526.9 437 68.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.9e-147 526.6 439 69.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.3e-147 524.2 437 68.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.0e-145 520.8 444 67.6
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.8e-145 520.0 449 67.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.7e-145 518.1 438 68.3
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-144 516.9 438 68.3
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-143 513.8 438 67.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.2e-143 513.1 438 67.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.8e-143 512.7 451 66.7
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-142 510.4 438 67.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.8e-142 510.0 451 66.5
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.4e-142 509.6 451 65.9
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.1e-142 509.2 448 65.2
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.4e-141 505.8 429 69.2
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 3.4e-141 505.8 445 66.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 3.4e-141 505.8 445 66.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.4e-141 505.8 449 65.7
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.9e-140 502.7 438 66.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.1e-138 496.5 467 62.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 7.9e-138 494.6 438 64.4
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.4e-137 493.8 436 66.5
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 3.0e-137 492.7 448 62.9
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 3.9e-137 492.3 436 65.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.5e-136 490.3 440 63.9
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.3e-136 489.2 437 64.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 7.4e-136 488.0 438 63.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 7.4e-136 488.0 439 63.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.4e-136 488.0 448 62.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.4e-136 488.0 446 63.5
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.7e-135 486.9 435 64.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.7e-135 485.7 449 64.1
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.8e-135 485.3 447 63.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 4.8e-135 485.3 443 62.3
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.3e-135 485.0 439 63.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.1e-134 484.2 413 67.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.1e-134 484.2 456 61.4
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.8e-134 483.4 449 63.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.4e-134 483.0 449 63.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.1e-134 482.6 440 63.0
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 9.1e-134 481.1 440 63.6
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.3e-132 477.2 450 63.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.7e-132 476.9 443 63.7
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.2e-132 476.5 443 61.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 2.2e-132 476.5 450 63.8
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 6.5e-132 474.9 436 64.4
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.1e-131 474.2 436 64.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.1e-131 474.2 440 61.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.4e-131 473.8 434 64.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.5e-131 473.0 438 64.4
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 3.2e-131 472.6 457 62.6
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 4.2e-131 472.2 450 62.2
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 9.4e-131 471.1 456 61.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.7e-130 469.5 449 59.9
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.7e-130 468.8 443 62.8
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 6.1e-130 468.4 421 65.8
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 7.9e-130 468.0 441 61.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 7.9e-130 468.0 454 60.8
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.0e-129 467.6 448 60.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.0e-129 467.6 450 62.2
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.4e-129 467.2 457 61.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.9e-129 465.7 442 63.1
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.5e-128 463.8 447 62.2
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.6e-128 463.0 449 60.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 5.7e-128 461.8 447 60.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.2e-127 459.9 442 62.4
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-126 457.6 436 62.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 3.1e-126 456.1 442 60.6
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.5e-125 453.8 446 58.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.0e-124 451.1 445 60.2
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.7e-124 450.3 446 61.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 5.0e-124 448.7 443 59.8
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.9e-123 446.8 444 59.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.5e-123 446.4 437 61.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 4.2e-123 445.7 443 59.8
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.6e-122 442.6 440 60.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 6.7e-121 438.3 484 56.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.0e-120 436.8 478 56.5
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.6e-120 436.4 440 60.7
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 7.4e-120 434.9 446 61.0
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.9e-117 425.2 379 65.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.5e-115 420.6 407 60.0
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 4.2e-115 419.1 436 59.2
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 4.2e-115 419.1 414 61.1
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 4.0e-113 412.5 436 58.7
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 4.8e-111 405.6 437 58.8
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.4e-102 376.7 453 51.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-101 374.4 352 63.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.2e-96 357.8 395 58.5
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.6e-93 347.4 315 64.4
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.7e-93 346.7 449 50.3
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 3.3e-91 339.7 356 54.5
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-90 337.4 391 54.2
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.3e-89 333.6 378 54.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.9e-87 326.6 444 48.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.9e-86 323.9 420 50.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.2e-86 323.2 431 50.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 2.8e-82 310.1 418 48.6
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 6.2e-82 308.9 270 64.8
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.3e-79 301.2 463 45.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.7e-79 300.8 460 44.3
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 4.6e-77 292.7 354 51.1
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.8e-69 265.4 276 56.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.5e-67 261.2 224 67.4
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-65 255.0 335 51.6
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 6.0e-61 239.2 369 48.2
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.0e-61 239.2 251 58.6
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 8.7e-60 235.3 276 56.5
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 2.2e-55 220.7 188 61.7
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.1e-54 218.4 204 63.7
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.8e-50 203.0 232 56.5
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.2e-48 198.4 249 53.8
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.4e-46 190.7 445 34.2
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 7.1e-46 189.1 382 36.1
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.3e-43 180.3 168 62.5
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 5.6e-43 179.5 366 37.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.6e-42 177.9 136 75.0
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-41 174.5 190 57.4
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.5e-40 171.4 272 44.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.5e-39 166.0 144 65.3
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 5.1e-36 156.4 438 32.2
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 4.3e-35 153.3 148 60.1
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.7e-28 129.4 162 52.5
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 4.8e-26 123.2 140 52.9
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 4.1e-25 120.2 216 41.2
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 4.6e-21 106.7 92 66.3
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.4e-20 105.1 147 48.3
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.8e-18 96.7 74 70.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 8.2e-18 95.9 107 58.9
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 6.9e-17 92.8 67 74.6
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 6.5e-15 86.3 189 40.2
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 2.5e-14 84.3 94 59.6
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.3e-10 72.0 172 36.0
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-06 58.9 37 78.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 7.2e-06 56.2 166 26.5


User provided reference genes

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