Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 0.0e+00 1126.7 553 100.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 4.6e-292 1007.3 553 89.9
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 6.0e-284 980.3 554 87.5
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 6.4e-278 960.3 578 84.1
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.3e-214 750.0 561 66.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 8.6e-214 747.3 564 64.7
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.5e-213 746.5 579 65.5
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 5.5e-213 744.6 563 65.5
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 3.6e-212 741.9 547 66.9
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.0e-211 740.3 487 72.7
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.8e-211 739.6 552 65.9
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 3.0e-211 738.8 574 64.6
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.0e-211 738.4 562 64.8
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 8.9e-211 737.3 563 65.9
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.3e-209 733.4 566 64.1
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 3.7e-209 731.9 562 64.1
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.9e-209 731.5 560 65.0
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.4e-208 729.2 557 64.5
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.5e-207 725.3 574 63.2
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.8e-207 724.2 567 64.0
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-206 723.4 567 63.8
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.7e-206 723.0 504 66.9
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.5e-205 719.9 563 63.4
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 3.6e-204 715.3 596 61.4
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.6e-204 715.3 562 63.2
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 3.6e-204 715.3 565 64.4
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.1e-204 714.5 586 62.5
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.0e-204 714.1 562 62.8
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.0e-203 713.8 562 62.8
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.8e-203 713.0 566 62.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.3e-203 712.6 545 64.8
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.1e-203 712.2 551 64.8
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 5.2e-203 711.4 520 67.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 6.8e-203 711.1 492 68.5
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 8.9e-203 710.7 562 61.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.4e-202 708.4 489 69.9
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 5.8e-202 708.0 550 64.2
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 7.5e-202 707.6 501 68.3
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.9e-201 705.7 573 62.5
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.1e-200 703.7 557 62.5
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.4e-200 703.4 574 62.2
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 2.4e-200 702.6 566 62.0
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.6e-199 699.9 579 61.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 4.6e-199 698.4 558 63.4
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 6.0e-199 698.0 550 63.1
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.7e-198 696.4 546 64.5
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 3.9e-198 695.3 562 63.0
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 6.6e-198 694.5 551 63.0
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 8.6e-198 694.1 566 62.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 8.6e-198 694.1 563 62.0
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 3.3e-197 692.2 565 61.2
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 4.3e-197 691.8 561 61.7
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.2e-196 690.3 505 65.3
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 5.2e-195 684.9 552 63.2
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 4.4e-194 681.8 563 61.1
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 5.8e-194 681.4 559 61.0
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 7.5e-194 681.0 565 61.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.2e-193 679.5 560 60.9
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 2.2e-193 679.5 576 59.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 6.4e-193 677.9 544 62.1
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 8.3e-193 677.6 494 65.2
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 3.2e-192 675.6 559 61.0
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.6e-191 673.3 558 60.2
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.7e-190 669.8 538 61.5
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 5.1e-190 668.3 559 59.6
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 5.1e-190 668.3 487 65.3
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 6.6e-190 667.9 561 59.9
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.3e-189 665.6 479 66.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.6e-188 663.3 583 58.3
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.8e-188 662.5 472 67.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 6.2e-188 661.4 511 62.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.1e-187 660.6 553 62.0
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.3e-187 659.4 560 59.3
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.2e-186 657.1 560 59.3
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.6e-186 656.0 443 69.8
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.7e-185 653.3 552 60.0
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 8.3e-185 651.0 520 61.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.1e-184 650.6 567 58.0
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 4.1e-184 648.7 559 58.7
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.6e-183 646.7 620 55.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.7e-183 646.0 547 61.2
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 4.6e-183 645.2 547 57.8
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.3e-182 642.9 511 61.6
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.0e-178 629.8 482 64.1
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.9e-178 627.5 565 58.1
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 8.4e-177 624.4 589 55.0
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 6.6e-174 614.8 483 62.1
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.3e-172 610.5 484 62.2
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.6e-172 610.1 529 59.7
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.5e-165 587.0 543 55.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 7.3e-165 584.7 561 53.3
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 4.2e-160 568.9 374 71.7
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 3.5e-159 565.8 396 69.2
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 8.7e-158 561.2 389 67.6
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.4e-155 553.9 389 65.8
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 6.9e-155 551.6 511 55.0
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.5e-154 548.9 453 61.8
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.1e-152 544.3 444 63.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.4e-152 543.9 350 72.9
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.1e-147 527.7 435 60.5
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 4.1e-147 525.8 553 51.5
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 3.4e-146 522.7 347 70.0
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 1.9e-144 516.9 552 52.2
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.7e-143 513.1 352 69.3
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.0e-134 484.6 523 51.6
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.5e-130 470.7 479 53.0
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.3e-129 467.6 348 65.2
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.0e-126 458.0 444 49.1
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.4e-126 457.6 407 56.3
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.3e-124 451.1 330 65.5
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.4e-123 447.6 302 69.9
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 2.0e-122 443.7 302 69.2
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 4.2e-120 436.0 324 65.7
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.5e-112 410.2 322 62.7
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 7.2e-112 408.7 491 43.0
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.4e-110 404.4 490 43.9
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.3e-110 403.7 373 58.4
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 1.7e-97 360.9 310 59.4
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.6e-95 353.2 253 65.6
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.7e-92 344.4 246 67.5
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.0e-90 337.4 259 63.3
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.0e-85 320.9 218 67.0
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 8.3e-76 288.9 505 33.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.6e-74 283.1 211 61.6
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.3e-72 276.6 255 57.6
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.4e-60 236.1 148 75.0
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.7e-58 230.7 161 67.7
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.8e-58 229.2 227 54.2
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.5e-53 214.9 138 71.0
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.4e-53 213.4 160 60.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.5e-37 161.8 205 47.3
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.3e-36 158.7 165 56.4
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 3.5e-34 150.6 123 57.7
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 7.9e-34 149.4 172 43.6
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.8e-30 138.3 120 62.5
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 5.3e-30 136.7 93 75.3
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 1.3e-28 132.1 147 54.4
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.0e-28 130.2 179 47.5
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.1e-27 129.0 89 70.8
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.5e-27 126.7 150 42.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 2.1e-26 124.8 86 69.8
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 5.5e-19 100.1 141 46.1
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.5e-12 76.6 70 50.0
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 7.2e-11 73.2 76 48.7


User provided reference genes

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