Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022805 Sechium edule HOM05D004133 ORTHO05D004683 8.6e-38 159.8 81 100.0
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 2.0e-31 138.7 81 87.7
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 2.7e-31 138.3 81 85.2
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 5.6e-29 130.6 81 77.8
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 5.6e-29 130.6 81 77.8
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 9.5e-29 129.8 81 80.2
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 1.0e-27 126.3 81 76.5
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 1.4e-27 125.9 81 76.5
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 2.3e-27 125.2 74 85.1
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 6.8e-27 123.6 81 76.5
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.2e-26 122.9 79 77.2
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 1.2e-26 122.9 81 75.3
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 2.6e-26 121.7 81 74.1
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 3.4e-26 121.3 80 75.0
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 3.4e-26 121.3 81 75.3
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 4.4e-26 120.9 80 77.5
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 7.5e-26 120.2 81 74.1
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 7.5e-26 120.2 79 77.2
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 9.8e-26 119.8 81 74.1
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 9.8e-26 119.8 81 74.1
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 1.3e-25 119.4 81 76.5
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 1.3e-25 119.4 81 71.6
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 1.7e-25 119.0 81 74.1
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 1.7e-25 119.0 81 72.8
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 1.7e-25 119.0 81 74.1
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 1.7e-25 119.0 81 75.3
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 2.2e-25 118.6 75 78.7
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 2.2e-25 118.6 75 78.7
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 2.2e-25 118.6 81 74.1
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 3.7e-25 117.9 81 70.4
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 4.9e-25 117.5 81 72.8
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 4.9e-25 117.5 78 75.6
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 8.3e-25 116.7 79 75.9
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 1.1e-24 116.3 81 71.6
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 1.1e-24 116.3 76 76.3
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.8e-24 115.5 81 71.6
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 1.8e-24 115.5 81 71.6
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 2.4e-24 115.2 77 75.3
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 3.2e-24 114.8 79 72.2
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.2e-24 114.8 79 73.4
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 3.2e-24 114.8 81 69.1
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 3.2e-24 114.8 78 75.6
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 4.1e-24 114.4 77 72.7
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 4.1e-24 114.4 77 72.7
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 5.4e-24 114.0 79 73.4
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 5.4e-24 114.0 81 74.1
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 7.0e-24 113.6 77 72.7
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.6e-23 112.5 79 72.2
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.7e-23 111.7 79 70.9
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 2.7e-23 111.7 81 70.4
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 2.7e-23 111.7 81 71.6
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 2.7e-23 111.7 75 74.7
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 3.5e-23 111.3 81 69.1
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 3.5e-23 111.3 81 69.1
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 4.6e-23 110.9 79 70.9
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 5.9e-23 110.5 79 69.6
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 7.8e-23 110.2 81 66.7
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.0e-22 109.8 80 68.8
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 2.3e-22 108.6 79 69.6
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 2.3e-22 108.6 77 68.8
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 3.0e-22 108.2 81 66.7
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 3.9e-22 107.8 79 67.1
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 6.6e-22 107.1 76 73.7
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 6.6e-22 107.1 81 67.9
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 6.6e-22 107.1 79 68.4
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 8.6e-22 106.7 79 67.1
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 1.1e-21 106.3 79 69.6
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 2.5e-21 105.1 79 65.8
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 2.5e-21 105.1 67 80.6
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 3.3e-21 104.8 79 65.8
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 4.3e-21 104.4 78 66.7
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 4.3e-21 104.4 81 66.7
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 5.6e-21 104.0 81 65.4
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 5.6e-21 104.0 81 63.0
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 5.6e-21 104.0 79 67.1
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 1.2e-20 102.8 79 65.8
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 1.2e-20 102.8 79 63.3
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 1.6e-20 102.4 81 60.5
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 1.6e-20 102.4 79 63.3
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 1.6e-20 102.4 79 64.6
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.1e-20 102.1 77 67.5
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 2.1e-20 102.1 89 64.0
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 3.6e-20 101.3 81 61.7
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 3.6e-20 101.3 79 64.6
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 6.2e-20 100.5 63 77.8
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 8.0e-20 100.1 77 67.5
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 1.4e-19 99.4 69 72.5
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 1.4e-19 99.4 69 72.5
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 1.8e-19 99.0 79 65.8
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 2.3e-19 98.6 79 60.8
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 4.0e-19 97.8 73 68.5
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 4.0e-19 97.8 73 68.5
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 4.0e-19 97.8 75 68.0
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 4.0e-19 97.8 72 68.1
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 4.0e-19 97.8 72 68.1
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 6.8e-19 97.1 69 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 1.2e-18 96.3 79 59.5
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 3.4e-18 94.7 73 64.4
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 3.4e-18 94.7 79 59.5
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 4.4e-18 94.4 62 74.2
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 4.4e-18 94.4 77 61.0
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 4.4e-18 94.4 74 64.9
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 1.3e-17 92.8 68 69.1
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 1.3e-17 92.8 68 69.1
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 1.3e-17 92.8 68 69.1
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 6.4e-17 90.5 84 59.5
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 8.3e-17 90.1 71 63.4
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 8.3e-17 90.1 79 57.0
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 1.1e-16 89.7 72 65.3
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 2.4e-16 88.6 67 65.7
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 4.1e-16 87.8 68 63.2
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 9.2e-16 86.7 67 65.7
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 1.2e-15 86.3 76 55.3
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 6.0e-15 84.0 77 50.6
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 6.0e-15 84.0 61 70.5
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 1.3e-14 82.8 65 64.6
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 1.7e-14 82.4 59 66.1
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 5.0e-14 80.9 67 61.2
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 6.6e-14 80.5 81 51.9
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 1.9e-13 79.0 67 58.2
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 7.3e-13 77.0 57 66.7
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 7.3e-13 77.0 79 43.0
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 2.1e-12 75.5 55 70.9
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 3.6e-12 74.7 55 63.6
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.6e-12 74.7 80 55.0
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 4.7e-12 74.3 55 63.6
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 1.8e-11 72.4 55 61.8
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 6.8e-11 70.5 57 59.6
vmacro14308 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 8.9e-11 70.1 81 43.2
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 3.4e-10 68.2 56 57.1
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 9.9e-10 66.6 84 45.2
Nitab4.5_0001357g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 1.0e-06 56.6 71 43.7
Lsat_1_v5_gn_8_40680 Lactuca sativa HOM05D000005 ORTHO05D000012 1.3e-06 56.2 55 47.3
Nitab4.5_0011455g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 3.0e-06 55.1 71 42.3


User provided reference genes

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