Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022793 Sechium edule HOM05D023703 ORTHO05D025099 7.1e-59 230.3 111 100.0
Sed0021859 Sechium edule HOM05D023703 ORTHO05D025099 4.5e-21 104.8 114 53.5
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.7e-12 76.3 95 46.3
ClCG07G013070 Citrullus lanatus HOM05D023703 ORTHO05D025099 3.8e-12 75.1 100 44.0
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 7.2e-11 70.9 69 46.4
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.2e-10 70.1 67 49.3
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.7e-10 68.9 68 45.6
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 4.6e-10 68.2 78 43.6
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 1.4e-09 66.6 79 43.0
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 6.7e-09 64.3 81 39.5
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.1e-08 63.5 96 37.5
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.1e-08 63.5 69 47.8
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.5e-08 63.2 69 39.1
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 1.9e-08 62.8 64 51.6
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.9e-08 62.8 65 47.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 2.5e-08 62.4 71 43.7
MELO3C012962.2 Cucumis melo HOM05D023703 ORTHO05D025099 2.5e-08 62.4 69 52.2
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.5e-08 62.4 68 50.0
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.5e-08 62.4 65 50.8
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 2.5e-08 62.4 65 50.8
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 7.4e-08 60.8 69 43.5
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 7.4e-08 60.8 72 45.8
CsaV3_3G025100 Cucumis sativus L. HOM05D023703 ORTHO05D025099 1.3e-07 60.1 69 50.7
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 1.7e-07 59.7 84 38.1
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 1.7e-07 59.7 64 50.0
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.7e-07 59.7 65 49.2
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.7e-07 59.7 69 43.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.2e-07 59.3 68 48.5
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 2.8e-07 58.9 65 46.2
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.7e-07 58.5 64 45.3
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.8e-07 58.2 86 36.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 8.2e-07 57.4 86 36.0
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 8.2e-07 57.4 87 35.6
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 8.2e-07 57.4 71 46.5
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 8.2e-07 57.4 93 38.7
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.1e-06 57.0 95 38.9
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-06 56.6 70 45.7
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-06 56.6 70 45.7
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.4e-06 56.6 70 45.7
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 1.4e-06 56.6 63 50.8
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.4e-06 56.6 76 42.1
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.4e-06 56.6 68 45.6
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.8e-06 56.2 71 43.7
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.4e-06 55.8 86 36.0
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 2.4e-06 55.8 73 37.0
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.4e-06 55.8 90 38.9
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.4e-06 55.8 104 34.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.4e-06 55.8 78 41.0
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 3.1e-06 55.5 82 36.6
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 3.1e-06 55.5 74 39.2
arahy.Tifrunner.gnm1.ann1.9450TA Arachis hypogaea HOM05D003277 ORTHO05D003275 4.1e-06 55.1 83 36.1
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.1e-06 55.1 77 42.9
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 4.1e-06 55.1 88 43.2
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 4.1e-06 55.1 78 41.0
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 5.3e-06 54.7 64 45.3
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 5.3e-06 54.7 84 38.1
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 9.1e-06 53.9 61 42.6
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 9.1e-06 53.9 66 45.5
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 9.1e-06 53.9 66 42.4


User provided reference genes

Program Settings