Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 1.3e-140 503.1 264 100.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.1e-65 252.3 311 55.3
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.9e-63 245.7 308 55.8
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.1e-60 236.1 325 50.2
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 8.9e-60 234.6 280 56.4
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.4e-27 126.3 296 39.5
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.9e-25 120.6 306 38.2
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 3.9e-23 112.8 261 38.7
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 6.7e-23 112.1 263 36.9
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.5e-22 110.9 262 37.4
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.6e-21 107.5 288 37.5
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 6.2e-21 105.5 264 37.9
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 2.0e-19 100.5 171 44.4
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 2.6e-19 100.1 261 36.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 9.6e-14 81.6 302 31.1
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-13 80.9 224 34.8
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 8.2e-13 78.6 184 37.5
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.1e-12 78.2 291 30.9
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.4e-12 77.8 181 37.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 3.1e-12 76.6 191 34.0
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.1e-12 76.6 124 40.3
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 4.1e-12 76.3 247 32.8
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.1e-12 76.3 247 32.8
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.1e-12 76.3 247 32.8
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 6.9e-12 75.5 219 34.7
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 9.0e-12 75.1 237 35.4
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.5e-11 72.8 295 32.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.9e-11 72.4 274 32.1
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-10 71.2 265 30.9
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.8e-10 69.7 269 32.3
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 5.0e-10 69.3 251 33.5
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.5e-10 68.9 256 30.1
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.5e-10 68.6 255 32.5
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.5e-10 68.6 305 29.8
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.1e-09 68.2 291 29.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-09 68.2 254 31.5
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.4e-09 67.8 277 32.1
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.4e-09 67.8 216 32.9
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.9e-09 67.4 211 32.7
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.9e-09 67.4 298 30.9
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 2.5e-09 67.0 218 31.7
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 2.5e-09 67.0 257 31.1
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.5e-09 67.0 270 30.7
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.2e-09 66.6 258 31.8
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.2e-09 66.6 172 29.7
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.2e-09 66.6 219 32.0
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 3.2e-09 66.6 262 28.6
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 4.2e-09 66.2 232 32.8
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 4.2e-09 66.2 135 35.6
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 4.2e-09 66.2 211 33.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 5.5e-09 65.9 119 40.3
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 7.2e-09 65.5 177 32.2
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.2e-09 65.5 103 39.8
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 9.3e-09 65.1 236 28.8
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 9.3e-09 65.1 174 33.9
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 9.3e-09 65.1 178 33.7
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 9.3e-09 65.1 199 33.2
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 9.3e-09 65.1 133 37.6
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.2e-08 64.7 299 30.4
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.6e-08 64.3 228 31.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.1e-08 63.9 212 31.6
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.1e-08 63.9 212 31.6
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.1e-08 63.9 256 29.3
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.1e-08 63.9 218 32.6
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 3.6e-08 63.2 220 32.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.6e-08 63.2 106 35.8
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 3.6e-08 63.2 96 33.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.6e-08 63.2 139 36.7
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.6e-08 63.2 232 32.8
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.6e-08 62.8 247 30.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.6e-08 62.8 121 33.1
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 6.1e-08 62.4 218 30.7
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 6.1e-08 62.4 218 31.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.1e-08 62.4 218 31.2
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.1e-08 62.4 218 31.2
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 6.1e-08 62.4 142 35.9
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.1e-08 62.4 121 37.2
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.1e-08 62.4 121 33.1
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 7.9e-08 62.0 239 31.0
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.0e-07 61.6 109 33.9
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.0e-07 61.6 125 36.8
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-07 61.2 218 31.2
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-07 61.2 138 34.1
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.3e-07 61.2 218 31.2
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.3e-07 61.2 140 35.0
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.8e-07 60.8 215 32.6
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.8e-07 60.8 161 34.8
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-07 60.5 186 30.6
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 2.3e-07 60.5 186 30.6
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.0e-07 60.1 185 34.6
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.0e-07 60.1 109 33.0
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.9e-07 59.7 258 28.3
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 3.9e-07 59.7 283 29.0
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 3.9e-07 59.7 97 42.3
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 5.1e-07 59.3 200 31.5
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 5.1e-07 59.3 187 32.6
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 5.1e-07 59.3 234 29.9
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 5.1e-07 59.3 105 35.2
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 5.1e-07 59.3 260 31.2
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 6.7e-07 58.9 261 29.9
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 6.7e-07 58.9 107 32.7
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 6.7e-07 58.9 270 29.6
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 6.7e-07 58.9 219 31.1
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.7e-07 58.5 181 32.6
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.5e-06 57.8 117 34.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.9e-06 57.4 191 32.5
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.9e-06 57.4 133 36.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.9e-06 57.4 229 31.4
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.5e-06 57.0 215 31.2
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.5e-06 57.0 209 34.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 3.3e-06 56.6 190 30.5
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.3e-06 56.6 267 29.6
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.3e-06 56.6 116 31.0
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 3.3e-06 56.6 255 30.2
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 4.3e-06 56.2 267 27.7
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 4.3e-06 56.2 262 29.0
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 4.3e-06 56.2 251 27.9
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 5.7e-06 55.8 261 29.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 5.7e-06 55.8 192 31.2
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 9.7e-06 55.1 101 35.6
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 9.7e-06 55.1 112 30.4


User provided reference genes

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