Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 7.9e-225 783.5 407 100.0
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.8e-214 748.4 407 95.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.4e-213 746.1 429 91.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.1e-210 736.5 407 93.6
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.3e-206 723.0 408 93.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 7.8e-188 660.6 406 83.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 5.2e-184 647.9 409 82.4
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.6e-183 645.6 406 82.3
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.2e-182 642.5 409 81.7
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.1e-181 640.2 409 82.6
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.1e-181 638.3 409 81.4
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.5e-180 635.2 409 80.9
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.6e-180 634.8 408 80.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 7.8e-180 634.0 414 80.4
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 8.6e-179 630.6 408 80.1
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-178 630.2 408 80.6
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.3e-178 628.2 409 80.9
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 5.6e-178 627.9 407 80.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.5e-178 627.1 410 80.0
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.8e-177 625.5 408 80.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 8.0e-177 624.0 411 79.3
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.4e-176 623.2 408 81.1
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.2e-175 620.2 408 79.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.4e-175 618.2 408 79.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 5.8e-175 617.8 410 79.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.8e-175 617.1 407 79.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 9.8e-175 617.1 408 80.1
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.7e-174 616.3 415 78.6
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.2e-174 615.9 408 78.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.7e-174 615.1 421 77.0
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.4e-173 613.2 409 77.5
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.9e-173 612.8 409 77.5
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.1e-173 611.7 412 77.7
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.4e-173 611.3 409 78.5
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.2e-172 610.1 411 78.3
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.7e-172 609.0 406 77.6
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.5e-172 608.6 413 77.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.0e-171 607.1 409 78.0
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.7e-171 606.3 408 77.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 3.0e-171 605.5 411 77.9
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 5.0e-171 604.7 409 77.5
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.0e-171 604.7 408 76.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 5.0e-171 604.7 418 77.8
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 8.6e-171 604.0 406 77.3
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-170 603.6 408 76.5
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.9e-170 602.8 423 75.9
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.5e-170 602.4 413 76.8
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 5.6e-170 601.3 410 76.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.6e-170 601.3 408 78.4
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 7.3e-170 600.9 409 77.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.2e-169 600.1 417 76.5
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.6e-169 599.7 409 76.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.1e-169 599.4 403 77.4
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.8e-169 599.0 406 78.1
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.6e-169 598.6 409 75.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-169 598.6 408 76.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.7e-169 598.2 446 74.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 6.2e-169 597.8 414 75.1
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 8.1e-169 597.4 412 76.2
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.8e-168 596.3 407 76.7
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.0e-168 595.1 411 77.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.2e-168 594.7 414 74.9
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.5e-167 593.2 413 76.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 4.4e-167 591.7 411 76.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 4.4e-167 591.7 406 75.1
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 4.4e-167 591.7 409 76.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 5.8e-167 591.3 409 76.0
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 7.5e-167 590.9 412 76.2
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.9e-167 590.5 418 74.9
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 9.9e-167 590.5 404 76.7
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.3e-166 590.1 410 75.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.9e-166 589.0 411 76.4
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.7e-166 588.6 414 74.2
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.7e-166 588.6 409 75.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 418 74.6
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 4.1e-165 585.1 414 75.1
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.1e-165 584.3 438 71.7
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-164 583.2 438 71.5
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.7e-164 582.4 412 74.0
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.5e-164 582.0 413 73.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.6e-164 581.6 413 73.8
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.3e-163 580.1 414 73.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.3e-163 579.3 418 72.7
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.3e-163 579.3 420 72.9
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.0e-163 578.9 408 73.5
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.0e-163 578.9 428 73.1
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 6.6e-163 577.8 409 74.8
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.8e-161 572.4 407 74.7
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 6.2e-161 571.2 426 71.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.4e-160 569.3 407 73.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 5.2e-160 568.2 358 82.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.9e-160 567.4 413 72.4
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 8.9e-160 567.4 341 85.0
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.3e-158 563.5 413 72.4
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.4e-157 560.1 414 71.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 7.1e-157 557.8 408 72.8
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 4.6e-156 555.1 411 70.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.3e-155 552.7 414 72.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.3e-154 548.9 386 74.1
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.7e-153 545.0 362 77.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.7e-153 545.0 362 77.6
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 8.4e-150 534.3 350 78.3
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.9e-149 533.1 412 69.4
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.5e-146 523.5 409 69.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 7.6e-143 511.1 476 62.4
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 7.6e-143 511.1 476 62.4
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 6.4e-142 508.1 338 77.2
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.1e-139 498.4 315 80.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.5e-138 496.1 420 65.5
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.5e-135 486.9 415 61.7
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.2e-132 477.2 408 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.3e-130 469.2 423 57.4
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.6e-129 466.8 353 70.0
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.6e-119 433.0 427 60.7
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.1e-116 423.3 402 61.7
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 4.3e-114 415.6 392 56.6
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 8.2e-113 411.4 271 78.2
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.4e-99 367.5 360 59.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.4e-99 367.5 324 65.1
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.7e-99 365.2 342 60.2
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-86 324.3 316 54.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.7e-84 315.8 419 44.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.5e-77 293.5 429 41.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.2e-74 284.6 244 63.9
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.3e-70 271.2 462 38.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 5.2e-67 259.2 469 36.2
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-60 238.0 325 43.1
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-56 224.2 134 85.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.4e-56 223.8 125 86.4
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 8.6e-54 215.3 315 41.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.2e-52 209.1 333 39.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-45 188.3 334 35.9
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.7e-44 183.0 104 83.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-43 181.4 104 82.7
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.3e-38 164.9 130 68.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.5e-37 161.4 104 76.0
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.2e-34 151.8 98 80.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.1e-29 135.2 138 58.7
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.3e-25 121.7 129 53.5
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 7.1e-24 115.9 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.7e-22 109.4 58 82.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.1e-19 102.1 131 48.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.8e-17 93.6 71 66.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.9e-16 91.3 102 52.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 3.0e-14 84.0 94 52.1
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 6.7e-14 82.8 65 64.6
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.6e-12 78.2 101 42.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 5.3e-11 73.2 49 77.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.2e-10 72.0 41 82.9
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-10 69.7 42 78.6
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.6e-10 69.3 42 73.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.9e-09 67.4 43 79.1
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.9e-08 64.7 57 59.6
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 5.5e-08 63.2 31 87.1
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 86.1
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 2.7e-07 60.8 46 69.6
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 2.7e-07 60.8 120 30.0
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 3.5e-07 60.5 67 49.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 3.5e-07 60.5 120 30.0
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 3.5e-07 60.5 120 30.0
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 4.6e-07 60.1 120 30.0
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 6.1e-07 59.7 82 46.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-07 59.3 155 29.7
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-07 59.3 120 30.0
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 2.3e-06 57.8 120 29.2
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 8.7e-06 55.8 60 56.7


User provided reference genes

Program Settings