Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 3297.3 1739 100.0
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2941.4 1745 87.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2940.2 1745 87.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2833.1 1886 81.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2423.3 1725 72.8
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2402.5 1720 73.2
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2388.2 1725 73.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2382.4 1721 71.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2377.8 1723 72.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2377.8 1730 70.7
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2377.4 1718 71.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2375.5 1724 72.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2375.1 1720 71.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2373.6 1722 71.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2373.6 1719 73.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2373.6 1725 70.9
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2355.9 1724 72.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2339.7 1724 70.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2337.8 1724 71.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2334.3 1722 72.5
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2332.8 1719 70.0
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2326.2 1724 71.6
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2323.5 1737 71.4
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2311.6 1725 72.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2310.8 1698 70.3
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2309.6 1729 70.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2309.6 1702 69.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2291.5 1724 71.9
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2290.8 1622 71.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2288.1 1690 70.5
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2286.1 1720 68.4
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2285.8 1729 69.6
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2285.8 1741 68.4
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2274.2 1705 69.1
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2256.5 1730 67.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2249.9 1694 69.5
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2239.5 1724 66.9
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2236.8 1726 68.4
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2234.5 1786 68.3
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2234.1 1748 66.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2231.8 1694 68.4
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2231.4 1695 68.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2223.4 1692 70.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2223.4 1745 66.3
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2217.2 1746 66.4
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1737 65.1
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2200.6 1722 67.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2198.7 1701 66.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2196.0 1729 66.5
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2193.7 1705 65.8
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2193.7 1738 66.1
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2192.2 1718 65.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2189.5 1704 66.3
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2189.5 1747 64.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2188.7 1729 66.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1688 67.2
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2185.2 1700 66.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2184.5 1670 67.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2180.2 1692 66.1
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2174.8 1767 67.1
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2171.0 1688 66.8
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2168.3 1696 66.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2167.5 1698 66.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 1689 66.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2161.0 1706 65.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2159.8 1687 67.1
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2156.7 1777 65.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2140.2 1744 64.1
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2133.2 1704 65.9
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1746 64.1
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2124.0 1710 66.3
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2122.8 1412 74.1
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2100.9 1693 64.5
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2092.0 1753 63.4
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2077.8 1728 63.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2077.8 1689 66.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2068.9 1750 63.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2055.4 1731 63.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2031.5 1683 63.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2009.2 1633 64.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2005.3 2127 53.7
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1993.0 1714 62.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1986.1 1294 73.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1971.1 1290 73.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1941.4 1719 62.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1919.4 1755 58.3
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1893.6 1695 59.9
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1891.3 1454 66.6
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1889.0 1469 64.1
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1863.6 1157 77.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1790.4 1784 56.4
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1718.7 1499 58.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1693.3 1688 54.1
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1690.6 1729 51.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1679.1 1448 64.8
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1666.4 1739 56.5
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1665.2 1756 51.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1618.6 1641 52.2
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1610.5 1043 74.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1458.7 934 74.5
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1456.4 1082 63.9
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1394.0 1105 67.7
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1339.3 1355 56.5
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1335.9 1087 66.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1329.3 1138 64.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1115.9 910 61.1
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1086.2 938 64.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.6e-293 1013.1 740 67.0
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.7e-274 949.9 614 75.1
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.7e-268 930.6 682 64.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.6e-253 880.9 597 70.7
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.7e-247 860.9 552 76.1
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-240 838.2 790 59.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 7.6e-224 782.3 1586 34.6
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 7.1e-206 722.6 848 42.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 4.1e-185 653.7 430 74.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-151 542.7 329 80.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.4e-148 532.3 374 70.1
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.0e-144 518.5 577 57.9
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 7.8e-128 463.4 635 54.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.8e-125 454.9 905 32.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.2e-107 396.4 698 37.2
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.4e-105 388.7 247 71.3
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 5.4e-105 387.5 519 56.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.1e-104 385.6 336 63.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 7.8e-104 383.6 241 77.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 4.7e-101 374.4 428 43.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.9e-87 328.2 214 69.2
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.8e-77 295.4 202 73.3
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.7e-74 286.2 356 52.2
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.2e-69 267.3 176 69.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 6.1e-64 251.1 175 65.1
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.0e-55 222.2 150 69.3
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.5e-51 208.4 170 65.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 2.7e-48 199.1 203 47.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.3e-45 190.3 433 46.7
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.4e-44 186.0 113 79.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.1e-40 172.9 98 85.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 3.3e-38 165.6 129 58.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 6.5e-34 151.4 128 55.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 6.8e-31 141.4 205 44.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 5.7e-30 138.3 123 54.5
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.5e-27 129.0 107 57.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 9.5e-25 120.9 69 76.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.7e-24 119.4 71 80.3
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 6.1e-24 118.2 63 92.1
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.4e-22 112.5 88 61.4
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 3.4e-22 112.5 93 62.4
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 4.4e-22 112.1 223 42.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.7e-22 111.7 61 82.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 9.2e-20 104.4 73 74.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 2.7e-19 102.8 207 35.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.8e-18 99.0 57 86.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.3e-17 95.5 71 59.2
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 4.7e-16 92.0 58 65.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.2e-14 87.4 51 74.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.4e-14 85.9 98 43.9
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.7e-14 85.1 254 39.4
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.2e-12 79.3 48 79.2
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 4.1e-12 79.0 50 72.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 9.2e-12 77.8 44 72.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.9e-11 75.1 291 30.9
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.8e-11 74.7 50 70.0
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 2.5e-09 69.7 44 77.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 2.5e-09 69.7 40 77.5
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.1e-08 66.6 35 82.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.6e-08 65.9 97 39.2
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 6.2e-08 65.1 165 29.7
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 6.8e-07 61.6 156 31.4
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 6.8e-07 61.6 54 50.0
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.0e-06 60.1 42 64.3
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 2.0e-06 60.1 69 47.8
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.4e-06 59.3 52 51.9
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.5e-06 58.2 49 63.3


User provided reference genes

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