Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022742 Sechium edule HOM05D000955 ORTHO05D001429 7.5e-30 133.7 93 100.0
ClCG08G015910 Citrullus lanatus HOM05D000955 ORTHO05D001429 1.8e-23 112.5 91 82.4
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 3.1e-23 111.7 91 62.6
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 4.0e-23 111.3 93 62.4
CsaV3_2G027840 Cucumis sativus L. HOM05D000955 ORTHO05D001429 4.4e-22 107.8 63 82.5
Sed0014484 Sechium edule HOM05D000955 ORTHO05D001429 7.6e-22 107.1 93 82.8
Sed0014668 Sechium edule HOM05D000955 ORTHO05D001429 3.5e-19 98.2 91 76.9
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 1.7e-18 95.9 62 75.8
Sed0017888 Sechium edule HOM05D000955 ORTHO05D001429 1.8e-15 85.9 56 71.4
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 3.8e-13 78.2 58 62.1
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 3.0e-10 68.6 53 62.3
Sed0006046 Sechium edule HOM05D000955 ORTHO05D001429 1.5e-09 66.2 55 60.0
MELO3C010864.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.5e-09 65.5 63 46.0
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 3.3e-09 65.1 55 60.0
CsaV3_4G034260 Cucumis sativus L. HOM05D000955 ORTHO05D001429 3.3e-09 65.1 55 60.0
Cfa018540 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.6e-09 64.3 53 60.4
MELO3C016746.2 Cucumis melo HOM05D000955 ORTHO05D001429 7.3e-09 63.9 55 58.2
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 9.6e-09 63.5 54 55.6
Sed0018620 Sechium edule HOM05D000955 ORTHO05D001429 2.1e-08 62.4 55 56.4
Prupe.1G436600 Prunus persica HOM05D000955 ORTHO05D001429 3.6e-08 61.6 46 65.2
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 3.6e-08 61.6 53 52.8
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 4.8e-08 61.2 54 53.7
Cfa018544 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.2e-08 60.8 53 56.6
Ciclev10002944m.g Citrus clementina HOM05D000955 ORTHO05D001429 6.2e-08 60.8 55 49.1
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 1.1e-07 60.1 47 59.6
Sed0009648 Sechium edule HOM05D000955 ORTHO05D001429 1.1e-07 60.1 47 66.0
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.1e-07 60.1 53 56.6
CSS0002475 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.4e-07 59.7 55 54.5
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 1.8e-07 59.3 52 51.9
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 3.1e-07 58.5 53 56.6
Thecc.08G008500 Theobroma cacao HOM05D000955 ORTHO05D001429 3.1e-07 58.5 49 59.2
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.0e-07 58.2 48 64.6
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 5.3e-07 57.8 54 46.3
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 6.9e-07 57.4 52 57.7
CsaV3_2G027850 Cucumis sativus L. HOM05D000955 ORTHO05D001429 9.0e-07 57.0 47 63.8
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 9.0e-07 57.0 59 49.2
RcHm_v2.0_Chr6g0307801 Rosa chinensis HOM05D017863 ORTHO05D020646 9.0e-07 57.0 41 68.3
CSS0002643 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.2e-06 56.6 55 50.9
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 1.2e-06 56.6 47 55.3
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 1.2e-06 56.6 55 52.7
QL02p004928 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-06 56.6 48 60.4
QL02p005025 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-06 56.6 48 60.4
QL02p005070 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-06 56.6 48 60.4
Rhsim06G0049200 Rhododendron simsii HOM05D000955 ORTHO05D001429 1.2e-06 56.6 53 54.7
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 54 51.9
vmacro04454 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.2e-06 56.6 53 47.2
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 1.5e-06 56.2 53 52.8
FvH4_2g34520 Fragaria vesca HOM05D017863 ORTHO05D020646 1.5e-06 56.2 42 61.9
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 48 56.2
CAN.G371.27 Capsicum annuum HOM05D000955 ORTHO05D001429 2.0e-06 55.8 48 56.2
vmacro21528 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 2.0e-06 55.8 53 54.7
Actinidia23270 Actinidia chinensis HOM05D000955 ORTHO05D001429 2.6e-06 55.5 53 52.8
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.6e-06 55.5 51 52.9
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 2.6e-06 55.5 44 56.8
Sed0026745 Sechium edule HOM05D000955 ORTHO05D001429 2.6e-06 55.5 62 48.4
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 4.4e-06 54.7 53 50.9
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.4e-06 54.7 58 53.4
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.4e-06 54.7 58 53.4
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.4e-06 54.7 58 53.4
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.4e-06 54.7 47 55.3
MELO3C010865.2 Cucumis melo HOM05D000955 ORTHO05D001429 4.4e-06 54.7 47 63.8
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 4.4e-06 54.7 51 49.0
CiPaw.15G059600 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.8e-06 54.3 49 53.1
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 5.8e-06 54.3 47 55.3
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 5.8e-06 54.3 47 55.3
Gohir.A03G076700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.8e-06 54.3 60 48.3
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 5.8e-06 54.3 62 45.2
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 5.8e-06 54.3 44 54.5
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 7.6e-06 53.9 61 49.2
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 7.6e-06 53.9 58 50.0
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 9.9e-06 53.5 48 56.2
Ciclev10003391m.g Citrus clementina HOM05D000955 ORTHO05D001429 9.9e-06 53.5 51 51.0
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 9.9e-06 53.5 52 50.0
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.9e-06 53.5 48 54.2
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 9.9e-06 53.5 53 49.1
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 9.9e-06 53.5 57 47.4


User provided reference genes

Program Settings