Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 0.0e+00 1619.8 846 100.0
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 0.0e+00 1331.6 807 84.9
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 0.0e+00 1212.2 862 74.8
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 0.0e+00 1181.8 852 74.6
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 2.9e-311 1071.6 809 70.3
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 2.5e-305 1052.0 868 65.7
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.5e-305 1052.0 868 65.7
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 2.5e-305 1052.0 810 68.1
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-304 1049.7 820 69.6
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.6e-304 1049.3 828 67.8
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 7.5e-302 1040.4 810 67.5
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 3.7e-301 1038.1 868 66.0
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 6.3e-301 1037.3 809 66.4
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-299 1033.1 834 67.5
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 2.0e-299 1032.3 811 69.2
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 5.2e-295 1017.7 844 65.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.4e-292 1008.8 808 67.9
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 7.0e-292 1007.3 808 68.1
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 1.3e-290 1003.0 864 64.1
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 5.0e-290 1001.1 818 63.1
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 8.6e-290 1000.3 825 65.8
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 1.2e-288 996.5 860 64.2
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 2.8e-288 995.3 734 68.4
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 7.8e-283 977.2 817 65.5
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 3.3e-281 971.8 865 60.1
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 4.3e-281 971.5 870 60.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 6.2e-280 967.6 814 64.5
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 1.8e-279 966.1 812 62.8
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 3.4e-278 961.8 821 62.7
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 4.9e-277 958.0 806 61.4
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 2.1e-275 952.6 788 65.2
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 3.5e-275 951.8 705 68.1
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 5.1e-274 948.0 592 75.3
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 6.6e-274 947.6 795 62.8
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 6.6e-274 947.6 711 68.6
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 2.5e-273 945.7 671 70.8
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 2.8e-272 942.2 684 70.9
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 5.2e-271 937.9 742 64.6
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 8.9e-271 937.2 742 64.6
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 9.9e-270 933.7 805 62.6
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.3e-269 933.3 810 62.0
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 2.9e-269 932.2 821 60.9
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 6.4e-269 931.0 799 59.7
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.9e-268 929.5 761 63.1
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.9e-268 929.5 743 62.7
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 5.4e-268 927.9 812 62.3
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 7.1e-268 927.5 754 65.6
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 1.2e-267 926.8 803 62.1
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 7.8e-267 924.1 802 61.8
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 2.3e-266 922.5 727 67.8
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 5.1e-266 921.4 721 66.4
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 1.1e-265 920.2 802 61.7
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 1.9e-265 919.5 831 60.6
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 9.6e-265 917.1 711 65.3
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 8.1e-264 914.1 815 61.2
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 9.3e-260 900.6 809 58.6
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 2.1e-259 899.4 790 64.2
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 7.8e-259 897.5 800 60.0
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 7.8e-259 897.5 908 57.5
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.0e-258 897.1 705 64.7
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.8e-255 886.3 793 61.4
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.2e-254 883.6 792 62.4
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.3e-253 880.2 636 69.2
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 4.2e-252 875.2 792 61.7
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 6.0e-251 871.3 770 61.6
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 2.5e-249 865.9 833 57.6
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 1.3e-248 863.6 803 58.5
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 4.0e-247 858.6 742 61.6
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 3.8e-245 852.0 782 58.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 1.9e-244 849.7 811 57.7
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 2.7e-243 845.9 767 62.5
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 1.8e-242 843.2 754 57.8
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 2.8e-240 835.9 739 59.4
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 2.4e-239 832.8 768 60.7
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 9.0e-239 830.9 708 60.5
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 2.9e-237 825.9 748 57.0
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 5.5e-236 821.6 854 55.9
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 7.9e-235 817.8 761 60.3
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 6.3e-232 808.1 841 54.8
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 6.9e-231 804.7 694 62.0
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 1.5e-230 803.5 790 58.6
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 3.4e-230 802.4 843 54.7
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 5.1e-226 788.5 799 54.9
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 6.7e-226 788.1 752 57.0
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 3.4e-222 775.8 758 57.8
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 2.5e-212 743.0 754 56.1
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.2e-203 714.1 626 63.7
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 1.2e-169 601.3 536 58.4
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 7.5e-169 598.6 399 71.9
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.6e-158 564.3 330 75.2
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 8.6e-157 558.5 586 59.4
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 2.1e-155 553.9 495 56.2
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 6.8e-154 548.9 523 52.2
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.2e-153 548.1 809 43.3
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 2.9e-144 516.9 498 58.0
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.7e-141 507.7 429 56.6
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 5.8e-137 492.7 403 66.0
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.3e-128 464.9 264 76.9
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 2.7e-110 404.1 346 55.2
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.1e-106 390.6 405 49.1
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 3.3e-100 370.5 188 87.2
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 4.2e-95 353.6 343 51.6
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 4.4e-92 343.6 519 47.6
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 1.3e-91 342.0 196 78.1
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 3.2e-87 327.4 336 61.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 3.0e-77 294.3 178 71.3
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.0e-57 228.4 262 62.6
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-36 159.5 117 65.0
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.7e-32 145.6 83 75.9
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-28 131.3 346 29.5
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.1e-21 108.2 111 47.7
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 3.5e-17 94.7 72 52.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.0e-17 94.0 77 55.8
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 5.1e-08 64.3 68 48.5


User provided reference genes

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