Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.7e-177 625.9 320 100.0
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 7.5e-154 547.4 318 85.8
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 2.9e-153 545.4 343 81.9
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.4e-152 543.1 313 85.6
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.9e-136 489.6 314 76.1
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.3e-133 477.6 315 74.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.1e-131 473.8 314 75.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.1e-131 472.2 314 74.8
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.6e-130 469.2 319 73.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 9.9e-130 467.2 314 74.5
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.9e-129 465.7 315 73.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.9e-129 465.7 322 71.7
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 2.9e-129 465.7 315 73.3
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.4e-128 463.4 314 73.9
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-128 462.2 312 73.7
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 4.2e-128 461.8 351 67.8
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-128 461.8 312 73.1
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.1e-128 461.1 312 73.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.3e-128 460.7 312 73.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-127 460.3 312 73.4
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.6e-127 459.9 312 73.4
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.1e-127 459.5 315 71.7
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 2.7e-127 459.1 316 70.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.5e-127 458.8 315 71.7
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 3.5e-127 458.8 313 71.2
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 6.0e-127 458.0 312 70.5
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.0e-127 458.0 312 73.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.8e-127 457.6 317 69.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.3e-126 456.8 318 71.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 4.3e-125 451.8 325 70.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.6e-124 449.9 322 69.9
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.1e-124 449.5 321 71.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.8e-124 449.1 316 72.2
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.8e-124 449.1 313 71.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.6e-124 448.7 312 71.2
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 6.2e-124 448.0 321 70.7
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 6.2e-124 448.0 320 69.4
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-124 447.6 314 71.3
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.1e-123 445.7 323 68.7
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 9.0e-123 444.1 312 71.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 9.9e-122 440.7 318 68.9
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.3e-121 440.3 312 70.5
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 2.9e-121 439.1 317 67.5
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.9e-121 438.3 327 66.7
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.9e-121 438.3 313 69.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 4.9e-121 438.3 322 68.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 8.4e-121 437.6 319 68.0
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 8.4e-121 437.6 325 67.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.9e-120 436.4 320 68.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.4e-120 436.0 317 66.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 3.2e-120 435.6 327 66.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.2e-120 435.6 310 68.1
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.2e-120 435.6 325 67.4
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 4.2e-120 435.3 314 67.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 7.1e-120 434.5 315 66.7
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 9.3e-120 434.1 316 66.8
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 2.7e-119 432.6 317 68.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.6e-119 431.8 321 67.0
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 6.0e-119 431.4 316 66.5
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 7.9e-119 431.0 316 66.8
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.0e-118 430.6 323 66.9
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.3e-118 430.3 314 67.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.8e-118 429.9 316 66.1
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.9e-117 426.4 318 66.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.9e-117 426.4 313 68.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 4.3e-117 425.2 318 65.7
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 7.4e-117 424.5 316 67.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 7.4e-117 424.5 309 67.6
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.6e-116 423.3 313 64.2
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.6e-116 423.3 315 64.4
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.1e-116 422.9 318 64.8
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.1e-116 422.9 318 65.7
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 8.1e-116 421.0 321 67.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.8e-115 419.9 321 66.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.8e-115 419.9 314 66.9
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.0e-115 418.7 321 66.7
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 5.3e-115 418.3 316 65.5
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 9.0e-115 417.5 327 64.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.5e-114 416.8 311 64.6
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.0e-114 416.4 321 66.7
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.0e-114 416.4 317 64.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 2.6e-114 416.0 321 65.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 6.4e-113 411.4 316 65.5
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.1e-112 410.6 338 61.8
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.4e-112 410.2 316 64.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 1.9e-112 409.8 312 66.0
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.9e-112 409.8 313 65.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.2e-111 407.1 333 63.4
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.6e-111 406.8 320 62.8
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.7e-111 406.0 374 55.6
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 8.7e-110 401.0 260 75.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 4.8e-108 395.2 310 62.9
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.4e-107 393.7 295 65.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 4.0e-107 392.1 276 68.8
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.3e-105 387.1 285 66.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.0e-102 377.5 273 66.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.3e-101 372.1 315 59.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 7.4e-101 371.3 241 76.3
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 2.1e-100 369.8 246 74.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.8e-99 366.7 278 65.1
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-95 354.0 230 76.1
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 8.7e-94 347.8 239 69.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.9e-89 332.8 311 54.7
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 8.5e-89 331.3 229 67.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.5e-88 328.6 317 51.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.6e-87 325.9 238 68.5
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.8e-84 316.2 216 72.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 5.5e-80 302.0 332 50.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 7.9e-79 298.1 229 63.8
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 8.8e-78 294.7 241 66.0
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 5.7e-77 292.0 308 51.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-76 290.4 238 63.4
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 6.3e-68 261.9 188 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.1e-67 259.6 302 45.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.4e-61 239.2 187 60.4
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.5e-56 224.2 184 63.6
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 4.5e-50 202.6 132 72.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.1e-48 198.0 321 41.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.2e-45 188.0 309 39.2
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.0e-41 172.6 320 37.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.1e-39 167.2 117 67.5
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-36 157.9 107 75.7
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.7e-34 150.2 125 58.4
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-33 146.0 111 64.9
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-33 146.0 111 64.9
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-33 146.0 111 64.9
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-31 141.0 105 69.5
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.8e-30 137.5 129 56.6
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-27 127.1 94 63.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.7e-26 123.6 90 64.4
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 5.6e-24 115.9 80 73.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 9.5e-24 115.2 81 75.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 8.7e-17 92.0 73 63.0
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 9.0e-14 82.0 54 66.7
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 3.8e-12 76.6 57 57.9
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-10 71.6 58 62.1
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-10 71.6 58 62.1
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 3.5e-10 70.1 87 48.3
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 2.4e-06 57.4 43 62.8


User provided reference genes

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