Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 5.0e-41 170.6 84 100.0
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 7.3e-16 87.0 94 60.6
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 1.1e-14 83.2 88 55.7
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 7.1e-11 70.5 91 48.4
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 4.6e-10 67.8 90 45.6
CsaV3_6G012390 Cucumis sativus L. HOM05D031423 ORTHO05D034979 1.3e-09 66.2 92 51.1
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.3e-09 66.2 94 47.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 2.3e-09 65.5 91 45.1
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.3e-09 65.5 96 46.9
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 3.0e-09 65.1 99 45.5
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 3.0e-09 65.1 96 43.8
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 5.1e-09 64.3 96 44.8
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.1e-09 64.3 96 47.9
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 5.1e-09 64.3 85 49.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.1e-09 64.3 96 40.6
CsaV3_6G012410 Cucumis sativus L. HOM05D031423 ORTHO05D034979 6.6e-09 63.9 92 50.0
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 6.6e-09 63.9 96 40.6
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 6.6e-09 63.9 93 44.1
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 6.6e-09 63.9 96 46.9
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.1e-08 63.2 89 47.2
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.1e-08 63.2 98 43.9
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.5e-08 62.8 96 44.8
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-08 62.8 93 43.0
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.9e-08 62.4 98 42.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 2.5e-08 62.0 91 48.4
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.5e-08 62.0 96 45.8
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 3.3e-08 61.6 93 46.2
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 4.3e-08 61.2 96 43.8
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 4.3e-08 61.2 87 46.0
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 4.3e-08 61.2 91 40.7
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 4.3e-08 61.2 98 42.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 4.3e-08 61.2 90 44.4
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 5.6e-08 60.8 95 43.2
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 5.6e-08 60.8 95 47.4
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 5.6e-08 60.8 92 37.0
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 5.6e-08 60.8 93 45.2
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 7.3e-08 60.5 88 43.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 7.3e-08 60.5 93 40.9
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 7.3e-08 60.5 86 46.5
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.2e-07 59.7 97 43.3
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.6e-07 59.3 89 44.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.6e-07 59.3 89 46.1
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.1e-07 58.9 96 43.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 2.8e-07 58.5 87 42.5
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 2.8e-07 58.5 87 42.5
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.8e-07 58.5 95 43.2
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 3.6e-07 58.2 98 40.8
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.2e-07 57.4 104 41.3
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 8.1e-07 57.0 88 42.0
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 8.1e-07 57.0 92 44.6
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.1e-06 56.6 90 38.9
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.1e-06 56.6 94 41.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.1e-06 56.6 94 41.5
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.4e-06 56.2 94 41.5
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 1.8e-06 55.8 88 42.0
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 2.4e-06 55.5 88 40.9
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.4e-06 55.5 90 42.2
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.1e-06 55.1 98 46.9
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.0e-06 54.7 97 44.3
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 5.2e-06 54.3 96 37.5
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 5.2e-06 54.3 95 42.1
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.2e-06 54.3 93 43.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 5.2e-06 54.3 98 42.9
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 6.9e-06 53.9 88 46.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 6.9e-06 53.9 92 40.2
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 9.0e-06 53.5 87 40.2
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 9.0e-06 53.5 97 40.2
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 9.0e-06 53.5 87 37.9


User provided reference genes

Program Settings