Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 2184.5 1100 100.0
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1755.3 1093 82.3
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 0.0e+00 1712.2 1091 79.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 0.0e+00 1619.0 1088 77.2
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 0.0e+00 1597.0 1012 80.3
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1119.8 1136 55.0
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1107.0 1140 53.9
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1105.9 1141 55.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1081.6 1153 53.9
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1080.1 1133 53.6
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1078.5 1136 54.6
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.5e-311 1072.8 1137 53.0
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 8.2e-309 1063.9 1116 52.9
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.1e-308 1063.5 1134 53.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 2.4e-308 1062.4 1140 53.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.4e-308 1062.4 1140 53.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 6.5e-306 1054.3 1139 53.2
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 6.5e-306 1054.3 1127 53.2
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.0e-303 1045.4 1143 52.8
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 6.3e-301 1037.7 1107 52.9
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-300 1036.9 1142 52.5
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.1e-300 1035.0 1107 52.8
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.1e-297 1026.9 1127 52.4
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.5e-297 1026.5 1136 51.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 2.5e-297 1025.8 1107 52.7
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 6.1e-296 1021.1 1108 52.4
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 8.0e-296 1020.8 1145 51.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.8e-295 1019.6 1099 52.3
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 7.5e-294 1014.2 1112 52.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 6.3e-293 1011.1 1116 50.8
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.4e-292 1009.2 1122 51.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 3.1e-292 1008.8 1130 52.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.0e-290 1003.8 1106 51.5
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.0e-287 992.3 1148 49.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.2e-286 990.3 1115 50.7
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 3.4e-286 988.8 1113 51.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.7e-285 986.5 1136 50.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 2.2e-285 986.1 1080 52.4
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.4e-284 983.4 1113 50.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.5e-283 978.4 1140 51.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.9e-282 975.7 1015 56.2
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 3.8e-282 975.3 1117 50.0
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.3e-281 971.8 1112 51.6
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.5e-278 963.4 1118 49.2
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.1e-276 957.2 1149 48.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-276 956.4 998 54.2
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 7.0e-276 954.5 1125 48.5
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 9.2e-276 954.1 1159 48.1
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.6e-275 953.4 1111 48.5
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.0e-275 953.0 1117 51.0
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.9e-274 948.7 1148 48.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 2.5e-273 946.0 1110 48.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.3e-269 933.7 1114 49.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 4.9e-269 931.8 1113 49.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 4.1e-268 928.7 1146 48.7
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 4.1e-268 928.7 1133 48.7
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 9.2e-268 927.5 1134 47.4
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.2e-267 927.2 1116 48.7
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 6.6e-266 921.4 1203 46.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.6e-264 916.8 1128 48.3
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.3e-263 912.9 960 53.6
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 4.0e-263 912.1 1142 48.3
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.1e-259 899.8 979 53.1
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.5e-259 899.0 940 54.8
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.5e-259 899.0 1176 46.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.1e-255 885.9 1124 45.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 4.0e-255 885.6 1138 46.8
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.1e-252 877.5 1118 46.8
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.9e-252 876.7 1117 46.9
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 3.2e-252 875.9 1104 47.9
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 4.1e-252 875.5 1105 47.3
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 4.1e-252 875.5 1117 46.9
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 9.2e-252 874.4 1119 46.3
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 7.8e-251 871.3 1116 46.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.1e-249 867.5 1124 46.0
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 9.6e-249 864.4 1122 46.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.8e-248 862.8 1130 45.8
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.1e-247 860.9 1168 45.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 8.9e-247 857.8 1133 45.4
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.2e-246 857.4 1134 46.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 5.8e-246 855.1 1147 44.9
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1125 45.9
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.2e-245 853.2 882 56.2
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 3.8e-245 852.4 1104 46.4
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 4.2e-244 849.0 1130 45.7
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 9.3e-244 847.8 1115 46.4
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 2.1e-243 846.7 1128 45.8
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.1e-243 846.7 1166 44.4
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 6.0e-243 845.1 1136 45.1
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.0e-242 844.3 1126 45.6
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1127 45.7
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1127 45.7
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.0e-242 842.8 1125 45.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 8.7e-242 841.3 1099 46.8
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.9e-241 840.1 1147 44.9
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 7.3e-241 838.2 1142 44.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 9.6e-241 837.8 1127 45.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.3e-240 837.4 1112 45.9
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 2.1e-240 836.6 1132 45.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.9e-239 831.6 1122 45.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.8e-237 825.9 1040 47.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 4.9e-237 825.5 1133 46.2
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.7e-235 819.7 1121 45.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.8e-230 802.0 718 60.0
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 7.6e-230 801.6 715 60.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.2e-228 796.2 736 59.1
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.1e-228 795.0 727 59.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.2e-221 773.5 1132 41.6
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 6.7e-218 761.9 1137 42.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.3e-210 737.6 784 53.1
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.5e-209 733.4 1143 42.2
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.1e-207 726.5 657 60.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.7e-205 720.7 912 46.8
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.1e-204 718.0 666 59.0
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 8.8e-202 708.4 502 71.7
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.0e-197 694.9 861 48.1
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.3e-193 679.9 903 45.6
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.2e-190 671.4 528 65.5
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 8.5e-189 665.2 940 45.1
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.7e-187 660.2 462 71.6
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.9e-181 640.2 890 44.4
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 3.2e-180 636.7 1139 38.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 9.4e-180 635.2 683 54.5
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.8e-170 602.1 655 53.0
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 4.9e-168 596.3 966 40.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.7e-155 553.1 692 48.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-124 451.8 268 86.2
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-124 451.8 268 86.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.5e-124 451.8 650 42.6
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 5.8e-121 439.9 675 39.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-108 398.7 413 53.0
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 2.4e-106 391.3 728 36.7
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 9.0e-98 362.8 328 56.1
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.5e-95 353.6 617 38.7
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.2e-94 352.4 617 38.6
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-90 339.0 206 84.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.1e-70 271.9 609 34.3
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.0e-61 241.5 221 55.2
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 5.4e-50 204.1 142 74.6
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.7e-46 191.0 688 28.5
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.0e-44 185.7 572 29.5
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 3.0e-40 171.8 146 59.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 9.5e-39 166.8 157 61.1
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 6.8e-37 160.6 91 89.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 7.0e-34 150.6 157 58.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 7.8e-33 147.1 87 79.3
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.1e-21 108.6 165 38.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.6e-20 105.5 385 28.6
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 9.9e-20 103.6 67 68.7
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-13 83.6 300 26.7
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.6e-09 68.2 179 32.4
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 3.0e-08 65.5 110 37.3
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 5.1e-08 64.7 81 43.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 6.6e-08 64.3 165 29.1
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 5.6e-07 61.2 176 27.3
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 3.6e-06 58.5 150 31.3
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 6.2e-06 57.8 154 31.8
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 8.1e-06 57.4 110 35.5


User provided reference genes

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