Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 0.0e+00 1738.0 926 100.0
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 0.0e+00 1213.7 886 71.4
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 0.0e+00 1209.9 905 69.5
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 0.0e+00 1180.2 937 66.6
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 0.0e+00 1118.6 1104 58.4
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 1.3e-251 873.6 895 52.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.9e-251 872.1 890 52.1
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 2.0e-247 859.8 889 52.5
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 4.6e-244 848.6 861 49.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.7e-227 791.2 893 51.4
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.4e-224 783.9 1006 43.5
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.8e-224 783.5 896 48.3
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.9e-221 773.5 936 47.5
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.9e-221 773.5 859 47.3
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.6e-220 770.4 891 48.6
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 7.3e-218 761.5 923 45.7
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 3.6e-217 759.2 923 45.6
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.5e-215 753.8 872 48.2
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.6e-210 735.3 921 44.7
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 7.4e-210 734.9 880 44.5
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 3.1e-208 729.6 1036 40.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-205 721.1 1072 39.7
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 5.5e-205 718.8 896 43.2
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 5.5e-205 718.8 874 46.0
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 9.6e-202 708.0 1014 43.2
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.8e-201 706.4 1029 41.4
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 3.1e-200 703.0 752 50.0
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.3e-200 702.2 945 44.7
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.3e-200 702.2 945 44.7
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.8e-198 696.0 990 42.8
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 4.2e-197 692.6 887 43.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 4.6e-196 689.1 895 45.4
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.3e-195 687.6 973 40.0
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.8e-195 687.2 927 43.7
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.3e-195 686.8 1039 40.3
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.0e-195 686.4 896 44.3
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 2.5e-194 683.3 901 44.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 7.4e-194 681.8 931 42.7
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 9.7e-194 681.4 1019 40.2
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.6e-193 680.6 902 44.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 6.3e-193 678.7 891 45.0
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.1e-192 676.4 891 44.2
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.1e-192 676.4 1084 42.3
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 4.1e-192 676.0 890 43.7
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 6.9e-192 675.2 889 43.2
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 9.0e-192 674.9 879 45.3
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.5e-191 674.1 888 43.2
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.0e-191 673.7 876 45.5
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.0e-191 673.7 1026 42.2
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-190 671.0 881 42.9
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.3e-190 671.0 881 42.9
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.3e-190 671.0 879 46.1
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 5.0e-190 669.1 910 43.2
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 6.5e-190 668.7 884 44.8
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.4e-189 667.5 911 45.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.4e-187 661.0 1077 39.7
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 3.3e-186 656.4 919 41.5
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.7e-185 654.1 1028 39.0
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 4.8e-185 652.5 1105 40.7
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.4e-184 651.0 961 42.9
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 4.1e-184 649.4 956 41.5
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.6e-183 646.7 955 39.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.2e-182 643.7 923 43.2
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.9e-182 643.3 867 42.6
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 6.5e-182 642.1 948 40.0
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.1e-181 641.3 1058 38.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.2e-180 637.9 1092 36.5
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 7.9e-180 635.2 717 48.3
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 9.7e-178 628.2 900 41.9
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.3e-177 625.5 912 39.5
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.4e-176 624.4 1052 37.3
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.1e-176 622.9 1022 40.6
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 2.6e-175 620.2 868 40.6
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.5e-175 619.8 1173 35.6
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 4.5e-175 619.4 925 40.9
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.3e-174 617.8 876 40.8
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.2e-174 617.1 995 36.1
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.5e-173 614.4 925 41.1
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.0e-171 608.2 1025 36.6
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.4e-171 607.8 773 46.1
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.0e-167 594.0 908 40.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 7.7e-167 592.0 924 39.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 4.2e-165 586.3 934 41.4
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 5.5e-165 585.9 773 44.6
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.4e-163 581.3 1016 35.5
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-163 580.1 1091 38.6
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.8e-161 573.5 561 51.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.3e-161 572.4 947 39.7
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 5.0e-158 562.8 875 39.5
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.0e-158 562.8 798 40.4
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.3e-155 553.9 1054 36.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.4e-154 550.1 861 39.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 2.4e-152 543.9 893 40.6
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 6.6e-150 535.8 638 47.0
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.1e-149 535.0 1015 36.8
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.5e-149 534.6 896 37.4
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.3e-147 527.3 896 38.7
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.0e-143 514.2 1073 34.7
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.8e-143 512.3 634 45.4
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.4e-139 501.5 1185 30.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-136 491.1 799 37.4
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 2.7e-135 487.3 927 37.3
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.8e-131 474.6 869 34.3
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.7e-126 458.0 640 42.0
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 5.6e-125 453.0 878 35.2
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 8.9e-123 445.7 677 40.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.8e-116 424.1 596 40.3
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.2e-111 408.7 378 53.7
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 7.3e-109 399.4 510 41.4
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 5.6e-101 373.2 816 30.5
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.9e-97 360.1 488 40.0
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 8.7e-94 349.4 863 29.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.3e-93 347.1 326 52.8
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.5e-88 331.3 860 29.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.2e-72 277.7 297 49.5
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 9.4e-72 276.2 547 36.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.2e-55 222.6 305 45.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.8e-54 218.8 290 41.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.2e-52 211.8 215 49.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-51 208.8 225 47.6
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.4e-51 208.4 638 26.6
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.4e-51 208.4 511 31.7
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-48 199.1 328 43.0
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.9e-48 198.7 402 41.5
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.6e-45 188.3 382 30.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.9e-42 177.2 216 44.9
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.5e-41 173.7 131 58.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 7.2e-40 170.2 191 43.5
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.7e-39 168.3 248 39.5
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.0e-38 166.4 212 45.3
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.8e-37 159.8 353 36.5
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.7e-33 149.1 219 41.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.9e-32 145.6 282 34.0
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.8e-31 141.7 215 40.5
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.6e-29 135.2 183 41.5
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.2e-26 126.3 172 42.4
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-25 122.9 118 53.4
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 5.0e-25 120.9 210 36.7
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.5e-21 109.4 182 35.7
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.7e-20 105.9 111 48.6
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.1e-19 101.3 154 41.6
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-16 92.0 530 29.6
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.1e-14 86.7 190 32.1
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 3.1e-14 85.1 202 31.7
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.2e-11 75.1 91 46.2
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 4.6e-10 71.2 153 30.1
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.3e-09 69.7 51 54.9
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.0e-09 68.6 92 41.3
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 6.8e-06 57.4 35 57.1


User provided reference genes

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