Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 9.6e-127 456.8 229 100.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 4.2e-106 388.3 209 91.9
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.1e-105 386.0 209 90.9
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.7e-104 380.9 209 90.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.5e-76 290.0 211 68.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 3.5e-76 288.9 211 69.2
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.7e-75 286.6 211 67.8
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 3.2e-74 282.3 210 66.7
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.2e-74 282.0 210 69.5
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.1e-73 279.6 211 65.9
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.1e-73 279.6 211 65.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.6e-73 278.9 211 66.8
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 3.6e-73 278.9 211 68.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.7e-73 278.5 211 68.2
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.4e-72 276.9 211 67.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.4e-72 276.9 212 67.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.4e-72 276.9 209 67.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.8e-72 276.6 209 67.0
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.9e-72 275.4 211 65.4
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.9e-72 275.4 212 65.6
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.8e-72 274.2 218 66.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.1e-71 273.9 210 65.2
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.5e-71 273.5 211 66.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.0e-71 273.1 211 66.8
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.0e-71 273.1 213 65.3
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.6e-71 272.7 212 66.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 2.6e-71 272.7 210 64.3
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.6e-71 272.7 211 64.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.4e-71 271.9 210 63.8
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 4.4e-71 271.9 209 64.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 9.7e-71 270.8 211 64.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-70 270.0 211 64.5
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-70 270.0 211 64.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.7e-70 270.0 211 65.9
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.7e-70 268.9 211 64.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 6.3e-70 268.1 211 63.5
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.3e-70 268.1 211 64.5
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 8.2e-70 267.7 211 64.0
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-69 266.9 212 65.1
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.4e-69 266.9 211 64.9
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.1e-69 265.4 222 62.6
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 4.1e-69 265.4 211 64.5
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 9.1e-69 264.2 201 63.7
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-68 263.5 211 64.0
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.6e-68 262.7 211 62.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 4.5e-68 261.9 211 62.1
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 4.5e-68 261.9 211 62.1
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 5.9e-68 261.5 209 67.5
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 7.7e-68 261.2 211 61.6
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.0e-67 260.8 211 63.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.3e-67 260.4 209 67.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.2e-67 259.6 212 66.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.2e-67 259.6 211 64.0
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.9e-67 259.2 211 65.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.9e-67 259.2 209 62.7
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.8e-67 258.8 211 63.5
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-67 258.1 211 63.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 8.5e-67 257.7 212 64.2
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.1e-66 257.3 211 61.1
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-66 257.3 211 61.6
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.5e-66 256.9 211 60.7
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.9e-66 256.5 209 66.0
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.9e-66 256.5 209 65.1
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.5e-66 256.1 211 62.6
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.5e-66 256.1 211 62.1
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.2e-66 255.8 223 59.6
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.2e-66 255.4 209 64.6
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 5.5e-66 255.0 212 61.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 7.2e-66 254.6 209 62.7
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.4e-66 254.2 209 64.6
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 9.4e-66 254.2 194 66.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.2e-65 253.8 211 62.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.1e-65 253.1 211 63.0
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 4.7e-65 251.9 211 60.2
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 6.1e-65 251.5 195 62.1
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.8e-64 250.0 210 61.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 3.0e-64 249.2 211 61.1
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 5.2e-64 248.4 212 61.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 8.8e-64 247.7 211 60.7
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.2e-63 247.3 211 58.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.2e-63 247.3 209 63.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-63 246.5 210 63.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.0e-63 246.5 210 63.8
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 3.4e-63 245.7 208 62.0
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.4e-63 245.4 212 59.0
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 9.7e-63 244.2 209 63.6
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.7e-62 243.4 211 58.3
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 6.3e-62 241.5 211 58.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 6.3e-62 241.5 211 59.7
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-61 240.0 235 57.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-61 239.6 211 58.8
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 3.1e-61 239.2 211 60.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.1e-61 238.8 211 58.3
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 7.0e-61 238.0 211 58.3
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.6e-60 236.9 235 56.6
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.0e-60 236.5 207 58.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 4.5e-60 235.3 247 51.8
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.7e-59 233.4 211 55.9
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.9e-59 232.6 212 57.1
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.5e-59 231.5 212 59.0
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 8.5e-59 231.1 267 47.9
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-58 230.3 212 59.0
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 9.4e-58 227.6 254 52.0
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.4e-58 227.6 211 59.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-57 227.3 172 68.0
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.5e-55 220.3 211 54.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.6e-55 219.5 188 61.7
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.2e-52 210.7 217 53.5
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.2e-52 210.7 217 53.9
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 5.9e-52 208.4 196 57.1
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.6e-51 204.9 216 53.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 2.8e-49 199.5 212 54.2
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.8e-48 196.8 211 51.2
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.8e-48 196.8 212 50.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.8e-48 194.9 212 49.1
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 3.4e-47 192.6 144 68.8
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.8e-47 191.0 175 56.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.1e-45 187.6 219 49.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.2e-45 186.0 165 58.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 5.9e-44 181.8 210 50.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.7e-43 180.3 211 50.2
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-43 179.5 189 55.6
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.3e-42 176.0 210 50.0
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 7.3e-42 174.9 145 62.8
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.3e-40 169.9 166 58.4
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.1e-40 169.5 211 43.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.7e-38 162.5 119 65.5
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.1e-37 159.1 155 54.2
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.1e-33 146.7 174 48.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.6e-33 146.0 154 55.2
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 5.8e-31 138.7 103 68.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.0e-28 128.6 193 39.4
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 6.2e-25 118.6 230 36.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.1e-24 117.9 225 36.0
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.5e-23 114.0 81 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 2.9e-22 109.8 143 41.3
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.0e-19 99.8 227 32.2
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 5.1e-19 99.0 168 35.7
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.5e-18 96.7 84 59.5
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.1e-16 89.7 62 79.0
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.4e-14 81.6 167 35.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 5.1e-11 72.4 62 66.1
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.6e-09 67.4 55 67.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.6e-09 66.2 65 50.8
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.2e-07 61.2 38 68.4
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.5e-07 60.8 57 56.1
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.6e-07 58.5 130 34.6
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.2e-06 57.0 38 63.2


User provided reference genes

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