Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 0.0e+00 1327.4 662 100.0
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 0.0e+00 1167.1 662 88.5
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 0.0e+00 1154.8 662 87.2
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 0.0e+00 1137.9 662 86.7
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 2.7e-254 882.1 659 69.5
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.1e-251 872.5 666 69.8
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 3.6e-251 871.7 658 68.4
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 4.7e-251 871.3 664 67.0
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 8.9e-250 867.1 669 68.0
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 5.8e-249 864.4 659 68.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 3.7e-248 861.7 661 69.4
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 4.6e-246 854.7 658 67.5
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 6.6e-245 850.9 674 66.2
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 1.5e-244 849.7 664 66.6
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 2.1e-243 845.9 660 66.5
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.6e-243 845.1 658 66.1
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 8.9e-242 840.5 660 67.1
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 8.3e-240 833.9 664 66.1
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.2e-239 832.0 666 67.0
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.7e-238 828.9 667 66.7
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 1.0e-237 827.0 667 66.6
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.3e-236 822.0 667 66.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 9.5e-236 820.5 657 65.3
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 2.8e-235 818.9 676 65.7
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.6e-235 818.5 660 65.3
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 4.7e-235 818.1 659 65.7
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.4e-234 816.6 672 64.6
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 1.8e-234 816.2 659 66.2
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.3e-234 815.8 667 64.0
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 4.0e-234 815.1 667 64.5
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 3.4e-233 812.0 665 64.4
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 6.4e-232 807.7 661 64.4
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 5.1e-229 798.1 664 64.2
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 1.1e-228 797.0 664 64.3
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-227 793.5 666 64.7
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 4.0e-226 788.5 667 63.9
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.3e-224 783.5 664 63.4
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 8.4e-224 780.8 680 60.9
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 1.4e-223 780.0 661 62.5
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 2.1e-222 776.2 675 61.5
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 2.7e-222 775.8 665 62.6
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 7.8e-222 774.2 672 63.1
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 7.8e-222 774.2 668 62.1
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.0e-221 773.9 672 62.9
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 1.7e-221 773.1 656 62.0
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 3.9e-221 771.9 675 60.7
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 5.1e-221 771.5 666 62.3
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 6.6e-221 771.2 675 61.2
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 8.7e-221 770.8 667 62.1
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 2.5e-220 769.2 674 61.7
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.3e-220 768.8 593 67.3
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.1e-218 763.8 669 62.5
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.8e-218 763.1 664 60.8
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 2.4e-218 762.7 677 61.0
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 4.0e-218 761.9 673 60.5
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 4.0e-218 761.9 662 62.1
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 9.0e-218 760.8 673 60.3
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 9.0e-218 760.8 677 60.9
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 7.6e-217 757.7 665 61.2
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.9e-216 755.7 674 59.8
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 4.9e-216 755.0 674 60.2
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 6.4e-216 754.6 676 59.5
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 1.9e-215 753.1 672 61.2
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 2.4e-215 752.7 575 66.8
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 5.4e-215 751.5 662 61.2
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.0e-213 745.7 689 58.5
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 8.7e-213 744.2 661 60.7
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 4.3e-212 741.9 667 61.8
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.3e-211 740.3 664 60.2
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.8e-211 739.2 665 61.5
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.8e-210 736.5 675 60.4
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 4.0e-210 735.3 667 60.7
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 6.9e-210 734.6 705 59.3
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.5e-209 733.4 679 60.4
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 2.0e-209 733.0 666 60.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 5.8e-209 731.5 656 60.2
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 7.6e-209 731.1 656 60.1
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.4e-207 726.1 641 61.0
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 4.6e-206 721.8 682 57.6
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.3e-205 719.5 656 60.1
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 8.7e-205 717.6 663 60.2
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.6e-203 713.4 669 60.2
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.1e-203 713.0 667 58.2
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.8e-203 712.6 663 58.4
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.7e-203 712.2 666 57.7
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.8e-203 711.8 672 58.8
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.0e-202 708.8 673 57.1
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 4.0e-202 708.8 658 58.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 3.4e-201 705.7 665 60.2
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 4.9e-200 701.8 666 57.8
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 8.4e-200 701.0 672 59.7
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 8.4e-200 701.0 685 56.6
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 5.5e-199 698.4 666 58.0
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 5.1e-197 691.8 664 57.2
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 7.4e-196 688.0 692 56.9
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.3e-195 687.2 663 58.1
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.1e-195 686.4 668 56.6
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.8e-195 686.0 663 57.2
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 2.6e-193 679.5 664 56.8
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 7.6e-193 677.9 671 56.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.4e-192 674.5 711 53.9
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.4e-191 673.7 696 55.5
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.1e-190 669.8 650 56.6
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.5e-188 663.7 659 56.9
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.3e-188 662.5 695 54.2
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 3.7e-187 659.1 676 56.1
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 1.1e-186 657.5 594 60.3
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 6.9e-186 654.8 681 53.3
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 2.1e-182 643.3 708 54.1
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 2.3e-181 639.8 662 53.9
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 3.1e-178 629.4 687 52.8
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 2.9e-176 622.9 678 53.4
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 3.3e-172 609.4 632 55.5
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 3.3e-172 609.4 726 50.1
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 7.4e-172 608.2 655 53.1
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 9.7e-172 607.8 496 63.7
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 5.9e-169 598.6 516 62.2
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 5.9e-169 598.6 645 52.6
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 2.9e-168 596.3 649 52.2
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 2.7e-166 589.7 670 49.4
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 9.7e-164 581.3 648 51.9
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.7e-163 580.5 509 60.5
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.3e-160 570.9 648 50.5
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 6.5e-160 568.5 503 60.2
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.5e-160 568.2 645 51.3
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.8e-157 558.1 682 48.5
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.5e-152 541.6 680 47.9
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 3.2e-151 539.7 532 56.0
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.7e-148 528.9 583 51.5
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.9e-144 516.5 677 46.1
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 8.9e-141 505.0 671 48.1
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.4e-138 497.7 553 53.7
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 5.2e-133 479.2 509 54.2
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-131 474.6 465 57.2
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.3e-131 474.6 440 58.9
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.8e-129 465.3 442 60.0
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 3.6e-126 456.4 656 44.4
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 4.3e-119 433.0 485 51.1
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.2e-118 429.1 590 43.7
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 6.0e-113 412.5 577 45.4
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.5e-111 407.9 698 41.3
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.9e-111 407.5 373 61.4
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 3.1e-109 400.2 710 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.0e-109 399.8 697 40.0
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 7.1e-106 389.0 354 63.0
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 7.1e-106 389.0 554 45.8
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 1.4e-98 364.8 262 76.0
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.5e-95 354.8 801 34.6
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.8e-94 350.5 289 64.4
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 6.0e-89 332.8 270 61.1
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 2.8e-86 323.9 709 36.5
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.1e-85 322.0 406 44.3
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 9.0e-77 292.4 262 63.0
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.4e-69 268.5 410 43.4
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 2.5e-66 257.7 296 46.6
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 3.6e-65 253.8 626 33.4
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.7e-62 243.8 333 43.8
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 8.2e-62 242.7 254 54.3
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 3.1e-61 240.7 624 33.5
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.7e-54 217.2 202 55.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.4e-48 198.7 232 54.3
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.8e-46 190.3 713 28.9
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 3.6e-33 147.5 146 55.5
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 1.8e-32 145.2 139 56.8
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 2.2e-30 138.3 177 51.4
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 9.2e-21 106.3 61 88.5
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 3.9e-19 100.9 88 58.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 6.6e-19 100.1 112 50.0
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 2.8e-17 94.7 93 61.3
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.8e-17 94.7 111 51.4
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 3.1e-16 91.3 78 62.8
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.0e-15 88.6 114 41.2
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 3.4e-15 87.8 68 61.8
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 6.4e-14 83.6 81 64.2
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 1.1e-13 82.8 136 41.9
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 1.6e-12 79.0 103 42.7
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 1.7e-11 75.5 77 50.6
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-11 74.3 50 72.0
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 5.0e-11 73.9 59 59.3
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 6.6e-11 73.6 54 61.1
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.6e-11 73.2 93 45.2
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.3e-10 71.2 44 79.5
Dinv01749 Davidia involucrata HOM05D003691 ORTHO05D004288 4.3e-10 70.9 47 63.8
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 7.3e-10 70.1 47 63.8
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 2.8e-09 68.2 50 60.0
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 8.1e-09 66.6 104 42.3
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 5.2e-08 63.9 46 60.9
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 8.3e-06 56.6 197 22.3


User provided reference genes

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