Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 2067.0 1070 100.0
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 0.0e+00 1836.6 1070 88.2
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 0.0e+00 1833.2 1070 87.5
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 0.0e+00 1828.9 1070 87.6
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1790.4 1068 86.1
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 0.0e+00 1448.7 1052 71.1
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1420.2 1062 69.0
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1409.0 1055 70.0
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1403.3 1079 68.1
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1401.7 1059 68.9
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 0.0e+00 1395.6 1053 69.2
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1379.4 1123 65.3
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 0.0e+00 1379.0 1082 66.9
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 0.0e+00 1361.3 1143 64.0
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 0.0e+00 1360.9 1057 66.9
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1346.6 1054 66.4
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1343.6 1049 67.0
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 0.0e+00 1338.6 1079 64.7
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 0.0e+00 1337.4 1054 66.1
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1336.6 1049 66.9
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1334.3 1056 65.0
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 0.0e+00 1333.5 1049 66.5
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1333.2 1074 64.4
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1332.8 1049 66.3
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 0.0e+00 1332.4 1058 65.9
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 0.0e+00 1332.0 1080 64.6
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1331.2 1058 64.9
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1330.5 1057 65.9
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1329.3 1123 63.4
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1328.2 1057 65.2
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1325.1 1056 65.1
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 0.0e+00 1324.7 1053 64.6
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1323.9 1057 65.7
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 0.0e+00 1319.3 1056 64.2
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1318.5 1058 64.6
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 0.0e+00 1317.0 1057 64.2
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 0.0e+00 1316.6 1091 62.8
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 0.0e+00 1311.6 1036 65.6
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1311.2 1059 66.4
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1309.7 1073 65.0
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 0.0e+00 1309.3 1070 65.0
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1308.9 1063 64.9
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 0.0e+00 1308.5 1067 64.2
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1307.0 1063 64.8
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 0.0e+00 1298.5 1061 63.1
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1291.6 1051 63.0
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1289.2 1049 63.6
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 0.0e+00 1287.3 1057 64.0
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1286.6 1055 63.2
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 0.0e+00 1286.2 1059 63.0
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1286.2 1072 61.9
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1283.1 1071 61.7
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1281.9 1049 63.2
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 0.0e+00 1280.4 1059 62.9
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 0.0e+00 1279.6 1049 62.8
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 0.0e+00 1279.2 1084 62.3
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 0.0e+00 1279.2 1058 62.7
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1275.0 1054 63.6
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 0.0e+00 1274.6 1054 64.3
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1270.8 1049 62.0
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1267.3 1049 62.6
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1265.0 1049 62.5
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1257.7 1058 62.4
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1257.3 1058 62.5
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1256.5 1058 62.5
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1256.1 1058 63.7
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1255.7 1053 63.7
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 0.0e+00 1255.7 1066 62.2
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 0.0e+00 1251.5 1176 57.3
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1241.1 1065 61.5
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1239.9 1058 60.8
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1236.5 1073 59.6
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1236.1 1066 61.8
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1236.1 1079 62.7
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 0.0e+00 1234.6 1086 60.6
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1232.6 1055 60.5
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1228.4 1065 60.9
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 0.0e+00 1227.6 1065 59.7
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1224.2 1061 60.0
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1219.1 1018 61.3
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 0.0e+00 1218.8 1057 61.5
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1217.6 1018 61.2
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1211.4 1060 59.3
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1211.1 1050 60.2
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 0.0e+00 1209.1 1073 59.8
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1206.8 1068 61.5
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1201.0 1060 59.6
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 0.0e+00 1191.4 1063 58.8
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1191.4 1057 59.1
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 0.0e+00 1190.6 1155 56.5
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1186.0 1056 60.8
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 0.0e+00 1183.7 1050 60.9
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 0.0e+00 1183.3 1053 58.4
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 0.0e+00 1179.9 1009 61.3
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1175.6 1054 60.3
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 0.0e+00 1172.1 1066 59.8
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 0.0e+00 1166.8 1080 58.0
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1164.4 1059 58.8
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1127.5 1004 58.5
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 0.0e+00 1125.2 1055 57.5
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1124.8 995 60.8
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 0.0e+00 1109.4 1091 54.3
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 0.0e+00 1102.8 945 61.4
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 0.0e+00 1095.5 1097 55.0
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 4.4e-307 1058.1 944 60.3
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 1.3e-295 1020.0 1067 51.5
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 8.6e-295 1017.3 1005 53.2
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 5.8e-291 1004.6 1083 51.2
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 4.9e-290 1001.5 896 59.0
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 4.9e-290 1001.5 991 54.9
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 6.8e-284 981.1 1124 47.9
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 1.4e-276 956.8 881 56.9
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 2.9e-274 949.1 708 69.1
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 3.2e-273 945.7 1081 48.8
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 1.6e-272 943.3 1078 48.9
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 2.3e-271 939.5 741 66.7
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 2.5e-270 936.0 695 69.2
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 4.4e-267 925.2 1016 50.0
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.2e-241 839.0 1064 46.7
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.3e-229 800.8 928 48.8
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-229 799.7 978 45.4
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.5e-214 750.7 999 44.4
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 3.2e-209 733.0 1129 39.7
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 2.6e-198 696.8 589 62.0
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 3.1e-196 689.9 1102 38.5
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 2.7e-187 660.2 1133 37.1
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 3.2e-180 636.7 492 68.5
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 4.4e-174 616.3 1056 37.9
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 1.4e-167 594.7 462 68.0
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-147 528.5 661 44.2
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 3.0e-130 470.7 365 69.9
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 2.5e-121 441.0 467 51.8
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 9.3e-116 422.5 504 48.6
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.7e-115 421.0 734 35.1
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-112 412.1 396 54.8
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 7.7e-110 402.9 319 69.9
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-87 329.3 755 32.2
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 8.8e-82 309.7 334 51.5
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 9.1e-79 299.7 1023 26.9
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 3.7e-56 224.6 159 69.2
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-55 221.9 370 35.1
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 3.5e-54 218.0 1006 22.7
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-52 212.6 290 36.6
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 1.6e-51 209.1 205 52.7
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.1e-51 206.8 395 33.4
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 4.0e-50 204.5 299 40.1
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 1.3e-48 199.5 161 60.9
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 1.3e-48 199.5 122 77.9
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 8.3e-48 196.8 161 60.2
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 1.1e-44 186.4 300 40.3
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 5.8e-41 174.1 1000 21.9
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-40 172.6 287 32.8
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 1.6e-38 166.0 126 62.7
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 2.7e-38 165.2 227 36.1
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 7.8e-38 163.7 1262 21.2
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 1.3e-37 162.9 157 56.7
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.1e-37 161.0 184 41.8
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-34 152.1 157 43.3
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-33 149.8 185 40.0
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.2e-32 145.6 136 46.3
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.7e-30 138.7 148 41.9
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 1.3e-29 136.3 109 63.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-29 136.0 174 39.7
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.0e-29 135.2 146 41.8
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 6.2e-27 127.5 181 43.1
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-26 126.7 122 46.7
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 7.6e-25 120.6 94 61.7
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-24 118.6 136 41.9
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 2.7e-22 112.1 125 39.2
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 1.0e-21 110.2 65 75.4
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-20 106.3 156 35.9
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.1e-19 102.4 132 36.4
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 8.1e-19 100.5 162 34.0
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-17 96.3 103 39.8
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.0e-17 95.9 119 35.3
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-15 89.4 95 40.0
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 2.4e-15 89.0 97 47.4
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.2e-15 88.6 95 41.1
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.7e-13 80.9 75 45.3
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 9.6e-12 77.0 66 54.5
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 1.8e-10 72.8 62 66.1
Medtr1g492720 Medicago truncatula HOM05D003580 ORTHO05D004441 6.9e-10 70.9 60 61.7


User provided reference genes

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