Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 5.6e-40 167.2 84 100.0
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 1.2e-26 122.9 66 92.4
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 1.6e-26 122.5 66 92.4
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 1.3e-25 119.4 69 85.5
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 2.3e-25 118.6 80 73.8
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 3.0e-25 118.2 67 86.6
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 3.9e-25 117.9 80 73.8
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 5.0e-25 117.5 66 84.8
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 1.1e-24 116.3 66 83.3
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 1.5e-24 115.9 66 83.3
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 2.5e-24 115.2 80 73.8
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 2.5e-24 115.2 80 72.5
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 3.3e-24 114.8 66 84.8
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 5.6e-24 114.0 71 80.3
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 5.6e-24 114.0 66 81.8
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 7.3e-24 113.6 66 81.8
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 9.5e-24 113.2 66 83.3
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.2e-23 112.8 67 85.1
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 1.6e-23 112.5 66 81.8
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 1.6e-23 112.5 80 75.0
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 2.1e-23 112.1 66 83.3
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 2.1e-23 112.1 66 83.3
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 83.6
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 2.8e-23 111.7 71 77.5
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 2.8e-23 111.7 66 78.8
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 83.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.8e-23 111.7 67 83.6
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 6.2e-23 110.5 80 70.0
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 6.2e-23 110.5 65 81.5
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 6.2e-23 110.5 67 82.1
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 6.2e-23 110.5 67 82.1
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 6.2e-23 110.5 65 81.5
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 8.1e-23 110.2 66 83.3
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 8.1e-23 110.2 67 83.6
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 8.1e-23 110.2 67 82.1
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.1e-22 109.8 80 72.5
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.1e-22 109.8 80 72.5
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 1.8e-22 109.0 66 81.8
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.8e-22 109.0 67 80.6
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 1.8e-22 109.0 66 78.8
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 1.8e-22 109.0 66 78.8
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 1.8e-22 109.0 80 71.2
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.8e-22 109.0 80 71.2
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 1.8e-22 109.0 67 80.6
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 1.8e-22 109.0 67 80.6
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 2.3e-22 108.6 66 75.8
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 2.3e-22 108.6 66 80.3
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 2.3e-22 108.6 66 77.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 3.1e-22 108.2 71 74.6
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 3.1e-22 108.2 83 69.9
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 3.1e-22 108.2 83 69.9
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 3.1e-22 108.2 65 80.0
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 3.1e-22 108.2 80 71.2
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 4.0e-22 107.8 67 80.6
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 4.0e-22 107.8 66 80.3
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 5.2e-22 107.5 67 80.6
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 5.2e-22 107.5 66 75.8
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 5.2e-22 107.5 66 75.8
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 6.8e-22 107.1 66 78.8
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 6.8e-22 107.1 66 78.8
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 6.8e-22 107.1 66 77.3
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 8.9e-22 106.7 66 77.3
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 8.9e-22 106.7 66 80.3
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 8.9e-22 106.7 66 77.3
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 8.9e-22 106.7 69 79.7
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 1.2e-21 106.3 66 75.8
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 1.2e-21 106.3 66 75.8
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.2e-21 106.3 67 74.6
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 1.5e-21 105.9 71 74.6
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 1.5e-21 105.9 80 70.0
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 2.0e-21 105.5 65 80.0
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 2.0e-21 105.5 66 78.8
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 2.0e-21 105.5 83 66.3
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.6e-21 105.1 80 68.8
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.6e-21 105.1 66 80.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 2.6e-21 105.1 71 74.6
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 3.4e-21 104.8 65 75.4
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 3.4e-21 104.8 66 75.8
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 4.4e-21 104.4 67 77.6
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 4.4e-21 104.4 80 70.0
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 4.4e-21 104.4 80 68.8
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 5.8e-21 104.0 80 67.5
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 5.8e-21 104.0 80 67.5
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 5.8e-21 104.0 67 76.1
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 5.8e-21 104.0 80 68.8
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 7.5e-21 103.6 67 74.6
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 9.9e-21 103.2 66 71.2
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 9.9e-21 103.2 66 74.2
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 9.9e-21 103.2 80 68.8
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 9.9e-21 103.2 66 72.7
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 1.3e-20 102.8 80 65.0
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 1.3e-20 102.8 80 65.0
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 1.7e-20 102.4 66 72.7
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 1.7e-20 102.4 80 66.2
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 1.7e-20 102.4 66 74.2
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 2.2e-20 102.1 66 74.2
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 2.2e-20 102.1 80 66.2
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 2.2e-20 102.1 66 71.2
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 2.9e-20 101.7 67 77.6
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 2.9e-20 101.7 66 69.7
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 2.9e-20 101.7 66 71.2
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 2.9e-20 101.7 66 71.2
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.9e-20 101.7 66 68.2
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 2.9e-20 101.7 80 63.8
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 3.7e-20 101.3 66 71.2
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.7e-20 101.3 66 71.2
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 4.9e-20 100.9 80 65.0
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 6.4e-20 100.5 80 65.0
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 8.3e-20 100.1 66 72.7
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 1.1e-19 99.8 66 72.7
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 1.1e-19 99.8 80 61.2
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 1.9e-19 99.0 66 68.2
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 3.2e-19 98.2 66 68.2
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 3.2e-19 98.2 66 69.7
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 3.2e-19 98.2 66 69.7
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 3.2e-19 98.2 66 69.7
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 4.1e-19 97.8 80 63.8
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 9.2e-19 96.7 66 68.2
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 9.2e-19 96.7 80 60.0
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 9.2e-19 96.7 80 62.5
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 9.2e-19 96.7 80 60.0
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 9.2e-19 96.7 66 66.7
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 9.2e-19 96.7 66 66.7
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 1.2e-18 96.3 66 68.2
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 1.2e-18 96.3 66 68.2
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 1.6e-18 95.9 66 68.2
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 2.1e-18 95.5 80 60.0
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 2.1e-18 95.5 80 57.5
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.7e-18 95.1 83 57.8
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.3e-17 92.8 66 66.7
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.3e-17 92.8 66 66.7
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 3.9e-17 91.3 67 65.7
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 3.9e-17 91.3 67 65.7
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 3.9e-17 91.3 67 65.7
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 8.6e-17 90.1 67 65.7
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.1e-16 89.7 67 64.2
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.1e-16 89.7 67 64.2
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 1.9e-16 89.0 65 67.7
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 1.9e-16 89.0 67 65.7
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 7.3e-16 87.0 80 57.5
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 1.2e-15 86.3 46 84.8
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 5.2e-14 80.9 66 56.1
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 9.9e-13 76.6 66 56.1
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.9e-12 74.3 44 81.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 8.4e-12 73.6 64 54.7
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 1.4e-11 72.8 66 54.5
HPP92_001782 Vanilla planifolia HOM05D004888 ORTHO05D005792 1.9e-11 72.4 80 46.2
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 7.1e-11 70.5 80 47.5
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 7.1e-11 70.5 41 73.2
RcHm_v2.0_Chr7g0216541 Rosa chinensis HOM05D004888 ORTHO05D005792 5.6e-08 60.8 54 61.1
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 9.6e-08 60.1 66 45.5
Zm00001eb106080 Zea mays HOM05D004888 ORTHO05D005792 1.6e-07 59.3 80 46.2
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 4.7e-07 57.8 58 50.0
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.1e-07 57.0 43 69.8
Sc16g0006310 Simmondsia chinensis HOM05D004888 ORTHO05D005792 8.1e-07 57.0 65 41.5
MCO11G307 Micromonas commoda HOM05D004888 ORTHO05D005792 3.1e-06 55.1 59 45.8
SMO356G0722 Selaginella moellendorffii HOM05D004956 ORTHO05D006284 4.0e-06 54.7 82 39.0
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 9.0e-06 53.5 66 50.0


User provided reference genes

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