Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022416 Sechium edule HOM05D003807 ORTHO05D002847 9.4e-89 330.1 160 100.0
Sed0023526 Sechium edule HOM05D003807 ORTHO05D002847 2.6e-46 189.1 176 67.6
ClCG01G025570 Citrullus lanatus HOM05D003807 ORTHO05D002847 2.1e-43 179.5 178 64.6
MELO3C007028.2 Cucumis melo HOM05D003807 ORTHO05D002847 1.6e-40 169.9 180 60.0
Peaxi162Scf00199g00915 Petunia axillaris HOM05D003807 ORTHO05D002847 3.2e-12 75.9 108 41.7
DCAR_001286 Daucus carota HOM05D003807 ORTHO05D002847 4.2e-12 75.5 64 64.1
Sabra01G0133000 Salix brachista HOM05D003807 ORTHO05D002847 9.3e-12 74.3 114 46.5
CiPaw.09G073700 Carya illinoinensis HOM05D003807 ORTHO05D002847 1.2e-11 73.9 84 46.4
Sabra03G0046300 Salix brachista HOM05D003807 ORTHO05D002847 3.5e-11 72.4 119 41.2
Solyc02g068460.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 4.6e-11 72.0 54 64.8
PGSC0003DMG400009442 Solanum tuberosum HOM05D003807 ORTHO05D002847 4.6e-11 72.0 54 64.8
Thecc.02G005500 Theobroma cacao HOM05D003807 ORTHO05D002847 6.1e-11 71.6 73 54.8
VMungo1309G0233 Vigna mungo HOM05D003807 ORTHO05D002847 6.1e-11 71.6 135 37.8
CAN.G1299.6 Capsicum annuum HOM05D003807 ORTHO05D002847 7.9e-11 71.2 57 61.4
Nitab4.5_0000443g0140 Nicotiana tabacum HOM05D003807 ORTHO05D002847 7.9e-11 71.2 52 65.4
Ca_01992_v3 Cicer arietinum L. HOM05D003807 ORTHO05D002847 1.0e-10 70.9 132 37.9
DCAR_004339 Daucus carota HOM05D003807 ORTHO05D002847 1.0e-10 70.9 68 60.3
DCAR_024218 Daucus carota HOM05D003807 ORTHO05D002847 1.0e-10 70.9 68 60.3
Sopen02g017600 Solanum pennellii HOM05D003807 ORTHO05D002847 1.0e-10 70.9 54 63.0
Nitab4.5_0008708g0020 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.8e-10 70.1 52 63.5
QL11p012767 Quercus lobata HOM05D003807 ORTHO05D002847 1.8e-10 70.1 79 46.8
Potri.001G158800 Populus trichocarpa HOM05D003807 ORTHO05D002847 2.3e-10 69.7 107 42.1
Phvul.009G241900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 3.9e-10 68.9 75 53.3
Potri.003G075800 Populus trichocarpa HOM05D003807 ORTHO05D002847 3.9e-10 68.9 51 66.7
Cfa000664 Carpinus fangiana HOM05D003807 ORTHO05D002847 5.1e-10 68.6 51 64.7
Haze_06156 Corylus avellana HOM05D003807 ORTHO05D002847 5.1e-10 68.6 51 64.7
Haze_06157 Corylus avellana HOM05D003807 ORTHO05D002847 5.1e-10 68.6 51 64.7
Eucgr.D00026 Eucalyptus grandis HOM05D003807 ORTHO05D002847 5.1e-10 68.6 63 55.6
Duzib248G0332 Durio zibethinus HOM05D003807 ORTHO05D002847 6.7e-10 68.2 72 48.6
Atru.chr10.409 Acer truncatum HOM05D003807 ORTHO05D002847 1.1e-09 67.4 61 60.7
CiPaw.10G062400 Carya illinoinensis HOM05D003807 ORTHO05D002847 1.1e-09 67.4 113 41.6
Duzib132G1175 Durio zibethinus HOM05D003807 ORTHO05D002847 1.1e-09 67.4 105 40.0
Prupe.4G116000 Prunus persica HOM05D003807 ORTHO05D002847 1.1e-09 67.4 133 36.1
TPR.G31858 Trifolium pratense HOM05D003807 ORTHO05D002847 1.1e-09 67.4 133 36.1
TWI63G0470 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 1.5e-09 67.0 85 43.5
Actinidia22425 Actinidia chinensis HOM05D003807 ORTHO05D002847 2.5e-09 66.2 121 35.5
Glyma.15G158200 Glycine max HOM05D003807 ORTHO05D002847 2.5e-09 66.2 79 49.4
CiPaw.10G062300 Carya illinoinensis HOM05D003807 ORTHO05D002847 3.3e-09 65.9 113 40.7
Lalb_Chr15g0083801 Lupinus albus HOM05D003807 ORTHO05D002847 3.3e-09 65.9 60 56.7
Manes.03G074500 Manihot esculenta HOM05D003807 ORTHO05D002847 3.3e-09 65.9 50 64.0
RcHm_v2.0_Chr5g0020711 Rosa chinensis HOM05D003807 ORTHO05D002847 3.3e-09 65.9 92 44.6
Sc05g0004730 Simmondsia chinensis HOM05D003807 ORTHO05D002847 3.3e-09 65.9 54 61.1
PGSC0003DMG400014938 Solanum tuberosum HOM05D003807 ORTHO05D002847 3.3e-09 65.9 74 51.4
arahy.Tifrunner.gnm1.ann1.H0VTBF Arachis hypogaea HOM05D003807 ORTHO05D002847 4.3e-09 65.5 51 60.8
Ciclev10016595m.g Citrus clementina HOM05D003807 ORTHO05D002847 5.7e-09 65.1 52 61.5
Duzib132G0260 Durio zibethinus HOM05D003807 ORTHO05D002847 5.7e-09 65.1 55 56.4
Lj1P1147T18 Lonicera japonica HOM05D003807 ORTHO05D002847 5.7e-09 65.1 69 53.6
Peaxi162Scf00198g00104 Petunia axillaris HOM05D003807 ORTHO05D002847 5.7e-09 65.1 66 50.0
Peaxi162Scf00199g00093 Petunia axillaris HOM05D003807 ORTHO05D002847 7.4e-09 64.7 86 46.5
FAN16G0324 Fragaria x ananassa HOM05D003807 ORTHO05D002847 9.7e-09 64.3 73 50.7
Lalb_Chr18g0052151 Lupinus albus HOM05D003807 ORTHO05D002847 9.7e-09 64.3 140 35.0
Medtr2g035850 Medicago truncatula HOM05D003807 ORTHO05D002847 9.7e-09 64.3 96 42.7
FvH4_3g12720 Fragaria vesca HOM05D003807 ORTHO05D002847 1.6e-08 63.5 73 50.7
FAN11G1675 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.6e-08 63.5 73 50.7
Nitab4.5_0000443g0160 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.6e-08 63.5 58 53.4
Os06g0666400 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 1.6e-08 63.5 96 44.8
Cpa.g.sc30.129 Carica papaya HOM05D003807 ORTHO05D002847 2.2e-08 63.2 52 57.7
PGSC0003DMG400009434 Solanum tuberosum HOM05D003807 ORTHO05D002847 2.2e-08 63.2 55 60.0
TWI38G0220 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 2.2e-08 63.2 52 57.7
Peaxi162Scf00556g00041 Petunia axillaris HOM05D003807 ORTHO05D002847 2.8e-08 62.8 66 50.0
SalBow8G4256 Salvia bowleyana HOM05D003807 ORTHO05D002847 2.8e-08 62.8 51 60.8
AL7G33860 Arabidopsis lyrata HOM05D009858 ORTHO05D011870 3.7e-08 62.4 158 36.7
CiPaw.03G111200 Carya illinoinensis HOM05D001711 ORTHO05D002847 3.7e-08 62.4 101 40.6
Thecc.02G005300 Theobroma cacao HOM05D003807 ORTHO05D002847 3.7e-08 62.4 114 42.1
FAN21G0474 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.8e-08 62.0 88 43.2
FAN25G3700 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.8e-08 62.0 68 51.5
Dinv31174 Davidia involucrata HOM05D003807 ORTHO05D002847 6.3e-08 61.6 54 61.1
Duzib211G0113 Durio zibethinus HOM05D001711 ORTHO05D002847 6.3e-08 61.6 59 54.2
Hma1.2p1_0088F.1_g045023 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 6.3e-08 61.6 50 62.0
Hma1.2p1_0088F.1_g045030 Hydrangea macrophylla HOM05D003807 ORTHO05D002847 6.3e-08 61.6 50 62.0
Sopen02g017610 Solanum pennellii HOM05D003807 ORTHO05D002847 6.3e-08 61.6 56 55.4
Nitab4.5_0002305g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 8.2e-08 61.2 57 54.4
Solyc02g031990.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 8.2e-08 61.2 56 55.4
Sopen02g010250 Solanum pennellii HOM05D003807 ORTHO05D002847 8.2e-08 61.2 56 55.4
SGA_v2.0_scaffold175G39345 Striga asiatica HOM05D003807 ORTHO05D002847 8.2e-08 61.2 98 40.8
TAR627G0259 Trochodendron aralioides HOM05D003807 ORTHO05D002847 8.2e-08 61.2 107 40.2
CANSAT35G1226 Cannabis sativa HOM05D003807 ORTHO05D002847 1.1e-07 60.8 60 56.7
Glyma.09G051900 Glycine max HOM05D003807 ORTHO05D002847 1.4e-07 60.5 83 43.4
Nitab4.5_0008965g0010 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.4e-07 60.5 59 50.8
Phvul.002G189900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 1.4e-07 60.5 51 56.9
Nn7g38292 Nelumbo nucifera HOM05D001711 ORTHO05D002847 1.8e-07 60.1 51 58.8
Psat1g149760 Pisum sativum HOM05D003807 ORTHO05D002847 2.4e-07 59.7 144 34.7
Carub.0007s2113 Capsella rubella HOM05D009858 ORTHO05D011870 3.1e-07 59.3 88 48.9
Glyma.08G087400 Glycine max HOM05D003807 ORTHO05D002847 3.1e-07 59.3 61 52.5
Nitab4.5_0000138g0140 Nicotiana tabacum HOM05D003807 ORTHO05D002847 3.1e-07 59.3 86 41.9
Oeu052638.1 Olea europaea HOM05D003807 ORTHO05D002847 3.1e-07 59.3 122 35.2
PGR004G1269 Punica granatum HOM05D003807 ORTHO05D002847 3.1e-07 59.3 57 56.1
Medtr4g094698 Medicago truncatula HOM05D003807 ORTHO05D002847 4.1e-07 58.9 82 43.9
Oeu046931.1 Olea europaea HOM05D003807 ORTHO05D002847 4.1e-07 58.9 78 44.9
Gohir.D12G046900 Gossypium hirsutum HOM05D003807 ORTHO05D002847 5.3e-07 58.5 87 42.5
Gorai.008G049400 Gossypium raimondii HOM05D003807 ORTHO05D002847 5.3e-07 58.5 77 42.9
Rhsim12G0015000 Rhododendron simsii HOM05D001711 ORTHO05D002847 6.9e-07 58.2 115 40.0
A01p11810 Brassica napus HOM05D009858 ORTHO05D011870 9.0e-07 57.8 137 36.5
BraA01t01123Z Brassica rapa HOM05D009858 ORTHO05D011870 9.0e-07 57.8 137 36.5
CiPaw.04G072500 Carya illinoinensis HOM05D001711 ORTHO05D002847 9.0e-07 57.8 78 46.2
Duzib133G1073 Durio zibethinus HOM05D001711 ORTHO05D002847 9.0e-07 57.8 59 52.5
Oeu008729.1 Olea europaea HOM05D003807 ORTHO05D002847 1.2e-06 57.4 51 56.9
TWI60G0522 Tripterygium wilfordii HOM05D001711 ORTHO05D002847 1.2e-06 57.4 90 43.3
Manes.09G079619 Manihot esculenta HOM05D001711 ORTHO05D002847 1.5e-06 57.0 112 35.7
Thecc.01G173400 Theobroma cacao HOM05D001711 ORTHO05D002847 1.5e-06 57.0 59 54.2
TPR.G31240 Trifolium pratense HOM05D003807 ORTHO05D002847 1.5e-06 57.0 53 54.7
TAR626G1107 Trochodendron aralioides HOM05D001711 ORTHO05D002847 1.5e-06 57.0 54 55.6
BcaC09g51353 Brassica carinata HOM05D009858 ORTHO05D011870 2.0e-06 56.6 63 52.4
C01p14010 Brassica napus HOM05D009858 ORTHO05D011870 2.0e-06 56.6 63 52.4
BolC1t01368H Brassica oleracea HOM05D009858 ORTHO05D011870 2.0e-06 56.6 63 52.4
CARHR226780 Cardamine hirsuta HOM05D009858 ORTHO05D011870 2.0e-06 56.6 71 50.7
Gohir.A11G155800 Gossypium hirsutum HOM05D001711 ORTHO05D002847 2.0e-06 56.6 128 36.7
Gohir.A12G048100 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.0e-06 56.6 59 49.2
Gohir.D11G162700 Gossypium hirsutum HOM05D001711 ORTHO05D002847 2.0e-06 56.6 119 39.5
Gohir.D12G047000 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.0e-06 56.6 64 48.4
Gorai.007G173300 Gossypium raimondii HOM05D001711 ORTHO05D002847 2.0e-06 56.6 119 39.5
ECA246G2171 Erigeron canadensis HOM05D003807 ORTHO05D002847 2.6e-06 56.2 94 39.4
Eucgr.K01342 Eucalyptus grandis HOM05D001711 ORTHO05D002847 2.6e-06 56.2 52 53.8
Glyma.05G133000 Glycine max HOM05D003807 ORTHO05D002847 2.6e-06 56.2 94 40.4
Zm00001eb311250 Zea mays HOM05D001711 ORTHO05D002211 2.6e-06 56.2 85 40.0
Migut.M02002 Erythranthe guttata HOM05D003807 ORTHO05D002847 3.4e-06 55.8 61 49.2
Gorai.008G049600 Gossypium raimondii HOM05D003807 ORTHO05D002847 3.4e-06 55.8 64 48.4
Duzib248G1013 Durio zibethinus HOM05D003807 ORTHO05D002847 4.5e-06 55.5 107 33.6
Zm00001eb233250 Zea mays HOM05D001711 ORTHO05D002847 5.9e-06 55.1 65 53.8
COL.COLO4_17629 Corchorus olitorius HOM05D003807 ORTHO05D002847 7.7e-06 54.7 50 56.0
QL11p039996 Quercus lobata HOM05D001711 ORTHO05D002847 7.7e-06 54.7 73 46.6
AT4G20000 Arabidopsis thaliana HOM05D009858 ORTHO05D011870 1.0e-05 54.3 159 34.6
Cpa.g.sc30.131 Carica papaya HOM05D003807 ORTHO05D002847 1.0e-05 54.3 60 53.3
Gohir.A12G048200 Gossypium hirsutum HOM05D003807 ORTHO05D002847 1.0e-05 54.3 61 47.5
QL11p040755 Quercus lobata HOM05D001711 ORTHO05D002847 1.0e-05 54.3 73 46.6
Sed0006784 Sechium edule HOM05D003807 ORTHO05D002847 1.0e-05 54.3 93 41.9
THA.LOC104806220 Tarenaya hassleriana HOM05D009858 ORTHO05D011870 1.0e-05 54.3 51 56.9


User provided reference genes

Program Settings