Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 4.4e-56 221.1 113 100.0
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 5.7e-40 167.5 126 73.0
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.7e-39 164.9 126 72.2
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.1e-38 163.3 128 72.7
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.9e-36 155.2 128 66.4
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 5.0e-28 127.9 122 55.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 6.6e-28 127.5 131 55.0
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 8.6e-28 127.1 113 57.5
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 3.3e-27 125.2 126 54.8
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 3.3e-27 125.2 127 54.3
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 5.6e-27 124.4 140 52.1
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.6e-27 124.4 108 59.3
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.6e-27 124.4 113 57.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 5.6e-27 124.4 113 54.9
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 7.3e-27 124.0 130 55.4
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 9.5e-27 123.6 113 57.5
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.6e-26 122.9 113 55.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 4.7e-26 121.3 116 58.6
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 6.1e-26 120.9 128 51.6
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 6.1e-26 120.9 124 54.0
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.1e-26 120.9 122 54.1
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.4e-25 119.8 126 56.3
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.4e-25 119.8 125 52.0
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.4e-25 119.8 113 54.9
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 4.0e-25 118.2 130 53.1
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 4.0e-25 118.2 119 52.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.2e-25 117.9 128 52.3
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.8e-25 117.5 119 50.4
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 6.8e-25 117.5 124 55.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.8e-25 117.5 124 51.6
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-24 116.7 119 52.9
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.5e-24 116.3 125 55.2
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.0e-24 115.9 113 53.1
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.4e-24 115.2 125 51.2
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.4e-24 114.8 121 49.6
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 5.7e-24 114.4 127 48.8
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 9.8e-24 113.6 122 50.8
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.8e-24 113.6 119 50.4
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.3e-23 113.2 126 50.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.3e-23 113.2 125 50.4
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 1.3e-23 113.2 117 49.6
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-23 113.2 127 51.2
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.7e-23 112.8 125 51.2
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.7e-23 112.8 125 53.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.7e-23 112.8 127 51.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.9e-23 112.1 118 50.0
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 3.7e-23 111.7 122 52.5
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.7e-23 111.7 125 51.2
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.7e-23 111.7 125 51.2
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.7e-23 111.7 123 50.4
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 3.7e-23 111.7 124 51.6
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 3.7e-23 111.7 125 52.8
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 4.9e-23 111.3 119 52.1
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.9e-23 111.3 123 51.2
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 4.9e-23 111.3 133 48.9
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 4.9e-23 111.3 117 53.0
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.4e-23 110.9 115 50.4
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.4e-23 110.9 117 51.3
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 8.3e-23 110.5 116 50.0
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 8.3e-23 110.5 123 50.4
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 8.3e-23 110.5 114 50.9
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.1e-22 110.2 125 49.6
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.1e-22 110.2 118 50.0
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.1e-22 110.2 142 45.1
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.4e-22 109.8 120 51.7
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.4e-22 109.8 125 50.4
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.4e-22 109.8 113 52.2
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.4e-22 109.8 123 52.0
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.4e-22 109.0 125 48.8
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.4e-22 109.0 123 48.8
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 3.2e-22 108.6 127 52.0
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 4.1e-22 108.2 126 50.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 9.2e-22 107.1 124 46.8
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.2e-22 107.1 120 45.8
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.2e-21 106.7 120 48.3
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.2e-21 106.7 132 46.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.6e-21 106.3 121 47.1
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.0e-21 105.9 119 51.3
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.7e-21 105.5 114 50.0
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.7e-21 105.5 123 48.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.7e-21 105.5 120 45.0
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.5e-21 105.1 118 50.0
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.9e-21 104.4 110 51.8
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 5.9e-21 104.4 124 46.0
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 7.8e-21 104.0 108 53.7
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 7.8e-21 104.0 123 48.0
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.0e-20 103.6 125 44.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-20 103.2 122 47.5
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-20 103.2 117 49.6
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.7e-20 102.8 130 45.4
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.7e-20 102.8 142 45.1
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 2.3e-20 102.4 109 48.6
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.3e-20 102.4 128 46.9
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 3.0e-20 102.1 118 50.0
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 3.9e-20 101.7 119 47.1
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 3.9e-20 101.7 122 49.2
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 3.9e-20 101.7 122 46.7
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 5.0e-20 101.3 130 50.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.0e-20 101.3 116 45.7
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 1.5e-19 99.8 113 48.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.9e-19 99.4 90 54.4
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 4.3e-19 98.2 115 47.8
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 5.6e-19 97.8 124 43.5
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 7.3e-19 97.4 133 44.4
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.6e-18 96.3 113 46.0
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.8e-18 95.5 126 44.4
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 4.7e-18 94.7 65 67.7
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.1e-17 93.6 116 41.4
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.4e-17 93.2 121 43.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 8.9e-17 90.5 127 49.6
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.5e-16 89.7 131 44.3
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.5e-16 89.7 131 44.3
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.0e-16 89.4 119 43.7
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.6e-16 89.0 120 45.0
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.6e-16 89.0 129 43.4
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.5e-16 87.4 101 43.6
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.7e-15 86.3 86 45.3
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 3.7e-15 85.1 106 44.3
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.4e-14 82.4 128 37.5
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.2e-14 82.0 68 52.9
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 6.0e-13 77.8 134 38.8
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 6.6e-12 74.3 98 42.9
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 1.5e-11 73.2 102 43.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.5e-11 72.4 63 50.8
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.2e-10 70.1 134 35.8
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.6e-10 69.7 78 43.6
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.7e-10 68.2 75 52.0
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 4.7e-10 68.2 108 37.0
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.4e-09 66.6 131 35.9
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 3.1e-09 65.5 102 36.3
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.4e-08 61.6 44 56.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 9.9e-08 60.5 105 35.2
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.3e-07 60.1 131 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.2e-07 59.3 117 30.8
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.9e-07 58.2 74 35.1
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.1e-06 57.0 59 45.8
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.9e-06 56.2 93 43.0
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.9e-06 56.2 50 46.0
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.9e-06 56.2 61 47.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.4e-06 55.8 49 53.1
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 5.4e-06 54.7 80 40.0


User provided reference genes

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