Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 2.6e-119 432.2 236 100.0
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 5.5e-93 344.7 235 82.1
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.2e-79 300.4 283 64.3
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 3.4e-79 298.9 236 74.2
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 6.1e-52 208.4 238 57.1
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 2.3e-51 206.5 232 55.6
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 8.8e-51 204.5 246 53.7
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 1.8e-48 196.8 243 55.1
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 2.7e-47 193.0 229 54.1
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 2.2e-46 189.9 241 51.5
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 3.2e-45 186.0 241 51.5
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 7.2e-45 184.9 243 49.4
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 1.2e-44 184.1 237 52.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 8.8e-43 177.9 240 49.2
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 1.2e-42 177.6 239 51.0
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 4.4e-42 175.6 244 49.6
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 4.4e-42 175.6 236 50.0
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 7.5e-42 174.9 239 51.0
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 9.8e-42 174.5 230 50.0
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.8e-41 172.9 236 51.3
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 4.1e-40 169.1 231 50.2
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 4.1e-40 169.1 242 47.5
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 5.4e-40 168.7 231 46.8
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 9.1e-40 167.9 235 47.7
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 9.1e-40 167.9 233 46.4
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.2e-39 167.5 236 49.2
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 4.5e-39 165.6 236 47.9
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.5e-39 165.6 230 49.1
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 1.0e-38 164.5 251 46.2
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.3e-38 164.1 231 49.4
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-38 164.1 231 49.4
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-38 164.1 231 49.4
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 2.3e-38 163.3 237 46.8
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 3.8e-38 162.5 233 48.5
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 3.8e-38 162.5 237 49.4
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 8.6e-38 161.4 234 48.7
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 1.5e-37 160.6 237 48.5
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.9e-37 160.2 230 49.1
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.5e-37 159.8 235 46.4
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.5e-37 159.8 232 48.3
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 2.5e-37 159.8 232 47.8
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 3.3e-37 159.5 231 48.5
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 3.3e-37 159.5 234 48.3
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 3.3e-37 159.5 243 45.3
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 3.3e-37 159.5 232 48.7
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.3e-37 159.5 238 47.5
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 5.6e-37 158.7 239 46.4
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.2e-36 157.5 235 48.5
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 1.6e-36 157.1 240 48.3
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 2.8e-36 156.4 234 46.6
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 3.6e-36 156.0 232 46.1
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 6.1e-36 155.2 234 48.7
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.8e-35 153.7 245 44.5
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.8e-35 153.7 242 43.8
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 4.0e-35 152.5 241 44.0
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 4.0e-35 152.5 252 47.6
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 5.2e-35 152.1 237 41.8
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 8.9e-35 151.4 235 46.8
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 1.5e-34 150.6 241 45.6
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.0e-34 150.2 231 46.3
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 1.3e-33 147.5 236 44.1
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.3e-33 147.5 235 46.0
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.7e-33 147.1 234 46.6
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 2.2e-33 146.7 232 47.4
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 1.1e-32 144.4 236 44.1
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.8e-32 143.7 233 45.1
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 5.4e-32 142.1 234 45.3
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 3.5e-31 139.4 230 45.7
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 3.0e-30 136.3 223 46.6
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 6.6e-30 135.2 224 43.3
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 2.1e-28 130.2 233 39.9
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 3.6e-28 129.4 229 45.0
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.8e-27 127.1 240 41.2
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 3.1e-27 126.3 231 41.6
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 5.2e-27 125.6 242 40.5
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 6.8e-27 125.2 233 42.9
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 8.9e-27 124.8 233 39.1
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 1.2e-26 124.4 210 39.5
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.5e-26 124.0 233 42.5
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 2.0e-26 123.6 240 42.9
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 6.4e-25 118.6 231 40.7
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.1e-24 117.9 351 33.9
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 1.4e-24 117.5 206 46.6
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.9e-24 117.1 227 41.4
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 5.4e-24 115.5 223 44.4
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 7.0e-24 115.2 233 42.5
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.5e-23 112.8 238 39.5
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 3.5e-23 112.8 117 59.0
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.6e-23 112.5 237 36.7
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.0e-22 111.3 152 50.0
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 1.7e-22 110.5 190 47.4
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 2.3e-22 110.2 240 41.7
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 3.9e-22 109.4 246 39.4
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 6.6e-22 108.6 231 39.4
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 2.5e-21 106.7 199 39.7
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 3.3e-21 106.3 155 47.1
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 3.3e-21 106.3 240 39.6
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.4e-19 100.9 71 74.6
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 2.3e-19 100.1 153 49.7
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 6.8e-19 98.6 180 45.0
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 5.8e-18 95.5 87 60.9
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 3.7e-17 92.8 136 44.9
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 8.3e-17 91.7 82 59.8
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.1e-16 91.3 191 41.4
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 1.9e-16 90.5 242 35.5
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 1.3e-14 84.3 155 45.2
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 8.6e-14 81.6 68 60.3
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 8.6e-14 81.6 112 48.2
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 2.5e-13 80.1 139 45.3
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.4e-11 74.3 94 52.1
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 9.9e-10 68.2 200 34.5
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 1.7e-09 67.4 231 31.2
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 1.7e-09 67.4 90 51.1
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 2.2e-09 67.0 244 32.8
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 6.4e-09 65.5 121 43.0
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 1.1e-08 64.7 235 31.9
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 3.2e-08 63.2 234 31.2


User provided reference genes

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