Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.6e-67 258.1 126 100.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.7e-51 204.5 133 79.7
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 4.0e-50 201.4 128 81.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.4e-49 198.4 134 77.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 5.2e-34 147.9 91 76.9
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.9e-32 141.4 131 56.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-31 140.2 127 59.8
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.2e-30 136.7 127 58.3
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.5e-30 135.2 130 57.7
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.6e-30 134.8 126 56.3
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.3e-29 133.3 127 59.1
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.1e-29 131.3 129 55.8
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 8.6e-29 130.6 130 56.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.5e-28 129.8 125 55.2
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.9e-28 129.4 127 54.3
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.3e-28 128.6 117 59.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 9.6e-28 127.1 128 56.2
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.2e-27 126.7 130 54.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.2e-27 126.7 124 54.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.1e-27 125.9 129 53.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.1e-27 125.9 123 54.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.8e-27 125.6 132 52.3
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.8e-27 125.6 130 54.6
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.6e-27 125.2 129 54.3
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.7e-27 124.8 136 52.9
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 6.2e-27 124.4 130 53.8
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.4e-26 122.5 130 56.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.1e-26 122.1 129 56.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 4.0e-26 121.7 86 67.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 5.2e-26 121.3 124 55.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 8.9e-26 120.6 125 50.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.2e-25 120.2 131 52.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-25 120.2 129 55.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-25 120.2 129 55.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.2e-25 120.2 125 50.4
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.2e-25 120.2 131 54.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.2e-25 120.2 139 51.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-25 119.8 129 55.0
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 3.4e-25 118.6 125 52.0
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.4e-25 118.2 126 56.3
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 4.4e-25 118.2 126 56.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.4e-25 118.2 136 52.9
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.8e-25 117.9 124 54.0
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-24 116.7 124 51.6
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.3e-24 116.7 126 56.3
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-24 116.3 125 52.0
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.2e-24 115.9 130 53.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.9e-24 115.5 130 54.6
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 4.9e-24 114.8 141 51.1
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 6.4e-24 114.4 123 52.8
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 8.4e-24 114.0 137 51.8
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.1e-23 113.6 122 54.9
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.4e-23 112.5 123 54.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.2e-23 111.7 127 54.3
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.1e-23 110.9 130 52.3
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 9.3e-23 110.5 90 58.9
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.6e-22 109.8 124 51.6
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.1e-22 109.4 133 48.9
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.7e-22 109.0 128 53.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.7e-22 109.0 122 50.8
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 6.0e-22 107.8 130 50.8
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 7.8e-22 107.5 127 48.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.0e-21 107.1 124 47.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-21 106.7 126 50.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.7e-21 106.3 135 48.1
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.3e-21 105.9 141 47.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.7e-21 104.0 128 49.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-20 103.6 128 48.4
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.9e-20 102.8 126 46.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.9e-20 102.8 124 49.2
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.5e-20 102.4 139 43.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.5e-20 102.4 117 50.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.3e-20 102.1 124 48.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 3.3e-20 102.1 123 48.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.6e-20 101.3 130 48.5
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.3e-20 100.9 127 48.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.3e-20 100.9 129 49.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 9.6e-20 100.5 128 50.0
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.6e-20 100.5 130 52.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 9.6e-20 100.5 126 49.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.1 132 48.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.1 132 48.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.1 132 48.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.3e-19 100.1 132 48.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.3e-19 100.1 131 47.3
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.6e-19 99.8 124 48.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.6e-19 99.8 94 54.3
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.1e-19 99.4 128 46.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-19 99.4 127 48.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.8e-19 99.0 125 48.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.8e-19 99.0 129 49.6
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-19 98.6 125 48.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.6e-19 98.6 123 48.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.6e-19 98.6 122 48.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.6e-19 98.6 87 56.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 4.8e-19 98.2 123 44.7
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.8e-19 98.2 128 47.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 4.8e-19 98.2 94 55.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 8.1e-19 97.4 123 46.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 8.1e-19 97.4 123 46.3
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 8.1e-19 97.4 123 46.3
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-18 97.1 123 46.3
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-18 97.1 123 47.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-18 97.1 128 46.1
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-18 97.1 123 51.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.4e-18 95.9 120 48.3
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.4e-18 95.9 130 43.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.0e-18 95.1 125 44.8
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 5.3e-18 94.7 124 48.4
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 5.3e-18 94.7 124 48.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.3e-18 94.7 87 59.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 9.0e-18 94.0 125 48.0
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.2e-17 93.6 128 50.8
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-17 93.6 87 59.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.5e-17 93.2 126 45.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-17 93.2 132 43.2
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.5e-17 93.2 132 43.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.0e-17 92.8 134 48.5
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.0e-17 92.8 93 53.8
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.6e-17 92.4 124 46.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.6e-17 92.4 122 46.7
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 2.6e-17 92.4 130 42.3
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.4e-17 92.0 90 53.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.8e-17 91.3 139 48.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.8e-17 91.3 116 48.3
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 9.9e-17 90.5 127 41.7
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.3e-16 90.1 125 44.8
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-16 90.1 91 56.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-16 90.1 91 56.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.7e-16 89.7 91 48.4
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.2e-16 89.4 121 48.8
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.9e-16 89.0 105 51.4
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.9e-16 89.0 99 46.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.9e-16 89.0 125 46.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.8e-16 88.6 105 50.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.8e-16 88.6 122 45.9
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 4.9e-16 88.2 112 49.1
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.4e-16 87.4 133 46.6
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 8.4e-16 87.4 92 53.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-15 87.0 125 41.6
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 128 43.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.9e-15 86.3 124 44.4
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.4e-15 85.9 123 42.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 3.2e-15 85.5 123 42.3
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.2e-15 85.1 123 43.1
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.1e-15 84.3 111 42.3
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 9.3e-15 84.0 98 50.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-14 83.6 82 54.9
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.6e-14 83.2 86 52.3
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.1e-14 82.8 90 43.3
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.1e-14 82.8 125 42.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.1e-14 82.8 126 42.1
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.7e-14 82.4 102 45.1
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.0e-14 81.3 102 47.1
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 6.0e-14 81.3 128 39.1
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 7.9e-14 80.9 87 48.3
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 7.9e-14 80.9 107 43.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.9e-14 80.9 127 44.1
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-13 80.1 127 43.3
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.3e-13 79.3 131 42.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.0e-13 79.0 119 40.3
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-13 79.0 124 43.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.9e-13 78.6 136 41.9
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.6e-13 77.8 135 40.0
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 8.7e-13 77.4 127 44.1
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.1e-12 77.0 103 41.7
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.5e-12 76.6 87 52.9
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 9.6e-12 73.9 123 41.5
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.8e-11 72.4 96 44.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.6e-11 72.0 90 48.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.8e-11 71.6 122 42.6
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.8e-11 71.6 132 37.9
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.2e-11 71.2 119 41.2
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.1e-11 70.9 104 38.5
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.4e-10 69.3 129 37.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.0e-10 68.6 46 67.4
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 4.0e-10 68.6 80 50.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-09 67.0 131 37.4
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 93 40.9
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 60 55.0
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.5e-09 65.1 116 38.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 9.9e-09 63.9 124 37.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 8.4e-08 60.8 95 43.2
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 86 40.7
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.4e-07 60.1 123 34.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.5e-07 58.2 91 39.6
ClCG07G017270 Citrullus lanatus HOM05D003592 ORTHO05D004208 4.6e-06 55.1 42 76.2


User provided reference genes

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