Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.9e-251 871.7 539 100.0
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.4e-205 719.9 534 81.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.4e-205 719.9 532 80.3
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.6e-203 711.1 527 80.5
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.3e-179 632.9 547 72.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.1e-172 609.8 563 66.1
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.7e-169 599.0 551 69.1
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.1e-168 597.4 532 69.9
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 2.6e-167 592.8 551 69.1
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.2e-166 589.7 525 68.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 4.2e-165 585.5 524 69.7
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.2e-164 583.9 547 66.5
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.6e-164 582.0 529 66.4
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 6.1e-164 581.6 531 72.9
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 6.1e-164 581.6 550 67.1
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 5.1e-163 578.6 535 68.0
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.0e-162 576.6 557 64.1
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 7.4e-162 574.7 552 65.2
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 7.4e-162 574.7 543 66.5
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 6.3e-161 571.6 550 65.6
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.8e-160 570.1 550 67.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.8e-160 570.1 480 71.2
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 2.4e-160 569.7 525 67.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.1e-160 569.3 538 68.2
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 4.1e-160 568.9 546 66.8
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 9.1e-160 567.8 525 66.9
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.0e-159 566.6 522 67.4
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.8e-158 562.4 524 67.6
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.2e-156 557.4 547 65.3
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 3.6e-156 555.8 536 65.9
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.8e-155 553.5 536 67.7
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 6.7e-155 551.6 528 67.2
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.1e-154 550.8 546 63.7
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.4e-152 543.9 553 65.3
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.8e-152 543.5 580 60.2
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.9e-149 533.5 531 63.5
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.2e-148 530.8 548 62.4
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 6.1e-148 528.5 494 66.2
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.4e-147 527.3 547 61.1
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 2.6e-146 523.1 548 60.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.4e-146 522.3 533 62.3
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.8e-145 519.6 485 69.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.8e-144 516.9 534 62.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.0e-143 513.5 548 62.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.3e-142 510.8 641 54.9
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 5.0e-142 508.8 539 60.7
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 7.2e-141 505.0 563 59.3
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 7.2e-141 505.0 470 68.9
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.7e-140 503.1 453 68.4
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.4e-139 500.7 567 57.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 2.3e-139 500.0 528 60.8
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 5.2e-139 498.8 561 61.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.7e-139 498.4 551 59.3
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 9.7e-138 494.6 543 59.3
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.3e-137 494.2 478 63.2
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 3.7e-137 492.7 488 65.6
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.8e-136 490.3 535 60.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.6e-135 487.3 462 65.4
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.6e-135 487.3 534 62.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.3e-134 484.2 554 58.8
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.3e-134 484.2 570 56.1
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.5e-133 478.8 476 62.4
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.4e-131 474.2 560 52.9
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 5.2e-131 472.2 492 58.5
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 3.4e-130 469.5 485 62.1
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 4.4e-130 469.2 428 67.8
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.4e-128 462.2 479 61.2
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.2e-127 461.1 552 57.1
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 2.7e-127 459.9 559 52.6
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 4.5e-127 459.1 550 59.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 4.5e-127 459.1 573 56.7
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.3e-126 456.8 577 52.0
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 3.8e-126 456.1 543 51.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 4.2e-125 452.6 559 57.2
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.1e-124 450.3 527 52.4
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.8e-124 449.9 463 57.5
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 4.7e-124 449.1 537 57.9
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.0e-123 448.0 573 56.2
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 2.3e-123 446.8 543 53.0
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 6.8e-123 445.3 426 66.4
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-122 444.5 573 55.5
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.3e-121 438.3 373 70.0
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.2e-116 424.5 546 58.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.6e-116 424.1 548 58.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.6e-116 424.1 549 58.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.6e-116 424.1 551 50.6
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.8e-116 423.3 523 56.6
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 3.6e-116 422.9 357 69.2
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.0e-115 421.4 349 67.9
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 1.4e-115 421.0 548 58.2
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 1.4e-115 421.0 548 58.2
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.8e-115 420.6 559 53.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 3.1e-115 419.9 525 50.7
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.8e-115 418.7 520 51.7
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.2e-113 413.7 549 56.3
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.9e-113 413.3 479 62.0
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.4e-112 411.0 359 70.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 4.1e-112 409.5 561 50.1
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 3.9e-110 402.9 552 46.4
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.3e-107 393.7 476 51.3
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.8e-107 392.1 433 62.4
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.7e-87 327.0 195 85.6
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.6e-82 310.5 195 80.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 4.4e-82 309.7 196 82.1
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 6.4e-81 305.8 231 66.7
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.3e-78 298.1 479 51.1
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 3.4e-66 256.9 353 55.8
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 7.6e-66 255.8 215 62.8
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 3.8e-65 253.4 215 62.8
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 6.5e-65 252.7 212 62.7
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-64 251.9 222 60.8
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.8e-59 234.6 246 54.1
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 4.5e-58 229.9 318 45.0
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.5e-56 224.2 218 56.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.8e-51 208.0 170 67.1
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 6.9e-51 206.1 297 42.4
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 6.7e-46 189.5 215 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.4e-43 181.8 214 47.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.0e-42 177.9 219 63.9
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 2.2e-41 174.5 209 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 7.9e-39 166.0 216 44.0
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 4.8e-36 156.8 293 35.8
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.5e-32 143.3 172 51.2
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.3e-30 137.9 150 49.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.0e-30 137.1 106 69.8
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 5.9e-26 123.2 195 44.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.5e-21 108.6 66 74.2
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.5e-21 108.6 147 51.7
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.3e-20 105.5 69 76.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.7e-20 105.1 159 53.5
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.1e-19 102.4 103 60.2
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.1e-19 100.9 91 58.2
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 9.1e-19 99.4 232 40.5
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 4.5e-18 97.1 209 41.6
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.2e-17 94.7 133 45.1
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 7.2e-16 89.7 155 41.3
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 2.1e-15 88.2 101 59.4
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 6.1e-15 86.7 68 69.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 8.8e-14 82.8 46 82.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 2.6e-13 81.3 104 53.8
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 8.3e-12 76.3 248 31.9
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.4e-11 74.7 64 59.4
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.1e-11 74.3 72 55.6
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 3.1e-11 74.3 116 42.2
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 7.0e-11 73.2 44 79.5
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 9.1e-11 72.8 40 90.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.7e-10 71.2 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.7e-10 71.2 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.7e-10 71.2 39 87.2
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.7e-10 71.2 68 55.9
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 2.7e-10 71.2 113 42.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.0e-09 69.3 49 77.6
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.3e-09 68.9 110 61.8
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.1e-08 65.9 51 68.6
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.9e-08 65.1 251 28.7
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 3.3e-08 64.3 52 63.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 4.2e-08 63.9 43 69.8
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-08 63.2 42 73.8
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.8e-07 61.2 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.8e-07 61.2 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.8e-07 61.2 40 82.5
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 3.6e-07 60.8 44 70.5
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.0e-06 59.3 58 53.4
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-06 59.3 53 60.4
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.8e-06 58.5 43 67.4


User provided reference genes

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