Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 4.0e-101 371.3 174 100.0
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.0e-68 262.7 156 78.8
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.0e-68 262.7 156 78.8
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.0e-67 260.4 156 78.2
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.7e-57 225.7 156 68.6
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.0e-56 223.8 155 69.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.3e-56 222.6 149 69.8
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 1.1e-55 220.3 150 69.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.1e-55 220.3 128 80.5
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 2.8e-54 215.7 153 70.6
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.3e-54 214.5 151 66.2
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.1e-53 213.8 149 68.5
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.4e-53 213.4 150 65.3
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.4e-53 212.6 149 65.1
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 2.4e-53 212.6 150 68.0
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.1e-53 211.8 150 68.0
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 4.1e-53 211.8 150 68.0
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.2e-52 210.3 150 66.7
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.0e-52 209.5 151 66.2
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 3.4e-52 208.8 155 65.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.7e-51 206.5 154 64.9
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 8.5e-51 204.1 150 66.0
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.1e-50 203.8 150 65.3
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.1e-50 203.8 150 66.7
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 2.5e-50 202.6 150 64.0
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 9.4e-50 200.7 150 63.3
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.2e-49 200.3 155 63.2
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.6e-49 199.9 150 62.0
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.6e-49 199.9 143 67.1
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.6e-49 199.9 150 60.7
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 6.1e-49 198.0 156 62.2
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 6.1e-49 198.0 156 60.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 8.0e-49 197.6 150 63.3
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 2.3e-48 196.1 151 62.3
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.1e-47 193.7 149 60.4
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 5.7e-47 191.4 156 61.5
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 1.7e-46 189.9 149 60.4
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.2e-46 189.5 156 59.6
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.2e-46 189.5 156 59.6
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.8e-46 189.1 149 60.4
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 3.7e-46 188.7 150 56.7
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 3.7e-46 188.7 156 59.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.1e-45 187.2 150 61.3
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.1e-45 187.2 149 59.1
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.4e-45 186.8 149 59.1
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.4e-45 186.8 151 60.9
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.8e-45 186.4 156 57.1
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 2.4e-45 186.0 156 57.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 3.1e-45 185.7 155 59.4
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 3.1e-45 185.7 157 58.6
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 9.1e-45 184.1 156 57.7
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 3.5e-44 182.2 157 58.0
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 6.5e-43 177.9 151 59.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 8.5e-43 177.6 151 59.6
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 1.5e-42 176.8 151 58.9
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.5e-42 176.8 151 58.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.5e-42 176.8 156 57.7
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.9e-42 176.4 151 59.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.5e-42 176.0 153 56.2
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 7.2e-42 174.5 156 57.7
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 7.2e-42 174.5 153 58.8
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 2.1e-41 172.9 151 54.3
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 2.7e-41 172.6 150 54.7
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 2.3e-40 169.5 151 56.3
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 6.7e-40 167.9 151 55.6
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 6.7e-40 167.9 151 55.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 6.7e-40 167.9 149 56.4
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.2e-39 167.2 151 54.3
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.2e-39 167.2 151 55.0
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 5.7e-39 164.9 151 55.0
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 9.7e-39 164.1 119 65.5
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 2.8e-38 162.5 150 50.7
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 6.3e-38 161.4 154 51.9
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 8.2e-38 161.0 150 50.0
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 3.5e-36 155.6 157 51.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.5e-34 149.4 113 59.3
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 2.7e-33 146.0 122 59.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.8e-30 135.2 127 52.8
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 3.0e-24 115.9 144 41.7
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 3.7e-22 109.0 181 36.5
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.8e-21 106.7 101 54.5
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 1.8e-21 106.7 99 59.6
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 2.4e-21 106.3 163 38.0
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 2.6e-15 86.3 62 62.9
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 3.2e-13 79.3 57 63.2
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.0e-11 74.3 68 52.9
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 3.7e-06 55.8 83 36.1


User provided reference genes

Program Settings