Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 0.0e+00 1189.1 625 100.0
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.0e-272 940.6 632 80.5
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 8.4e-258 893.6 635 78.0
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 8.6e-255 883.6 635 77.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.4e-228 795.8 634 72.7
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.1e-196 690.6 635 60.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.3e-191 672.9 636 59.1
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 2.2e-186 656.4 635 58.6
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 6.1e-184 648.3 638 58.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.8e-180 636.7 634 57.1
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 4.1e-180 635.6 641 56.6
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.3e-178 629.8 688 53.5
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.4e-175 620.5 665 53.1
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 9.8e-174 614.4 638 54.1
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 8.3e-173 611.3 637 55.4
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.8e-172 610.1 641 56.2
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 9.2e-172 607.8 637 54.5
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.2e-171 607.4 640 55.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.6e-171 607.1 643 53.7
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.0e-171 606.7 637 54.0
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.7e-171 606.3 641 55.1
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.4e-167 594.0 643 54.4
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 3.0e-167 592.8 638 53.3
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 8.9e-167 591.3 646 53.6
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.2e-165 586.6 652 52.8
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.7e-165 585.9 642 52.8
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-163 579.7 664 52.6
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-161 573.5 636 54.9
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.5e-161 573.2 636 54.7
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.3e-161 572.8 627 53.1
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.1e-159 566.2 637 52.0
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 5.2e-159 565.5 633 51.8
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.0e-158 563.5 636 52.5
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 2.6e-158 563.1 635 52.3
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 3.4e-158 562.8 636 52.0
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.4e-158 562.4 616 52.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.4e-158 562.4 637 52.4
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.8e-158 562.0 640 51.7
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 7.5e-158 561.6 635 52.3
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-156 557.8 637 52.3
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 5.4e-156 555.4 631 52.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 7.0e-156 555.1 635 51.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 7.0e-156 555.1 391 79.8
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 9.2e-156 554.7 650 50.0
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.2e-155 554.3 639 51.0
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.0e-155 552.0 669 49.6
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.3e-154 550.8 637 52.0
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 3.0e-154 549.7 638 52.7
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.3e-153 545.8 668 49.3
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.3e-153 545.8 637 51.5
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.2e-152 544.3 639 51.0
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.2e-152 542.0 653 50.4
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.1e-151 541.2 640 52.7
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.3e-151 540.0 651 49.6
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 4.9e-149 532.3 636 50.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 8.3e-149 531.6 641 51.2
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.4e-148 530.8 660 48.5
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 2.4e-148 530.0 635 49.8
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.2e-147 527.7 637 50.1
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 6.0e-147 525.4 642 50.3
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 3.9e-146 522.7 610 50.7
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.9e-146 522.7 638 47.8
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.5e-145 520.8 632 50.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-144 517.7 630 50.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 3.6e-144 516.2 638 49.4
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.2e-142 511.1 649 48.4
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.7e-141 507.3 633 49.1
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.9e-140 503.8 618 48.2
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 5.4e-140 502.3 645 46.4
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.7e-139 500.0 648 48.0
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.3e-138 496.9 646 47.4
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 9.6e-137 491.5 641 47.6
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.2e-136 491.1 568 51.6
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 3.6e-136 489.6 615 49.8
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.6e-136 489.6 650 46.0
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.7e-136 489.2 638 47.6
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.8e-135 487.3 630 48.9
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.1e-135 486.5 638 46.9
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.4e-134 483.0 615 46.8
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 7.6e-134 481.9 651 46.1
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 3.8e-133 479.6 643 45.7
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.1e-132 478.0 643 45.7
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 2.4e-132 476.9 617 47.0
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.2e-131 474.6 617 45.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 4.6e-131 472.6 693 44.0
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 6.0e-131 472.2 642 45.6
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.0e-130 471.5 620 45.8
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 5.1e-130 469.2 647 44.8
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 6.6e-130 468.8 637 43.6
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.5e-129 467.6 644 45.0
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 4.3e-129 466.1 637 43.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 3.6e-128 463.0 641 44.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.1e-127 461.5 621 45.6
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.4e-127 461.1 613 45.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 9.0e-127 458.4 667 42.7
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.0e-126 457.2 640 45.3
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.5e-126 456.1 509 53.0
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 9.9e-126 454.9 510 52.9
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 2.2e-125 453.8 627 45.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 4.2e-124 449.5 625 44.5
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.2e-123 448.0 640 44.1
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.7e-123 446.8 640 43.9
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.6e-123 446.0 648 44.4
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 5.1e-122 442.6 629 44.0
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 4.3e-121 439.5 635 42.8
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 9.6e-121 438.3 636 42.9
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 9.6e-121 438.3 631 45.8
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.8e-120 436.8 640 44.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.8e-119 434.1 639 43.7
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 2.4e-119 433.7 640 43.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.4e-119 433.7 638 43.7
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-119 433.3 638 43.6
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.9e-119 432.2 393 58.8
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 9.9e-118 428.3 639 43.5
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.3e-117 427.9 635 44.7
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 5.5e-116 422.5 639 43.2
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.8e-112 409.5 644 41.5
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.6e-110 403.7 635 42.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.6e-110 403.7 611 42.4
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 3.4e-110 403.3 612 44.0
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 7.6e-110 402.1 611 42.2
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 3.8e-109 399.8 614 42.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.7e-107 393.7 608 41.6
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 9.7e-105 385.2 543 44.9
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.3e-104 384.8 638 41.8
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.1e-103 380.2 632 44.1
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.4e-100 371.3 578 43.6
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.5e-97 360.5 412 52.2
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.1e-95 352.1 325 60.3
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 7.2e-84 315.8 348 52.9
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.3e-80 305.1 377 50.4
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-78 298.1 496 41.3
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.5e-76 290.8 251 59.8
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.2e-76 289.3 382 46.9
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.4e-66 258.5 580 35.9
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-64 251.1 256 56.2
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.7e-64 250.4 335 46.6
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 6.3e-64 249.6 440 37.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.7e-62 242.7 413 42.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 9.5e-60 235.7 547 34.0
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 8.0e-59 232.6 594 32.8
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 5.2e-58 229.9 204 59.3
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.6e-57 227.6 240 52.5
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.8e-56 224.2 243 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.2e-55 220.7 471 32.9
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 3.9e-53 213.8 646 30.0
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-45 188.7 280 43.9
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.5e-44 182.6 266 47.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.1e-42 177.6 266 43.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-40 172.2 273 41.8
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.9e-40 171.0 288 39.6
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.4e-39 168.7 234 44.9
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 8.6e-37 159.5 259 42.1
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.6e-35 155.2 175 53.1
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 5.4e-31 140.2 378 31.0
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.8e-30 136.3 95 71.6
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.0e-29 136.0 201 45.8
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 8.1e-27 126.3 115 55.7
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 6.4e-24 116.7 184 42.4
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.4e-23 113.6 179 40.8
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.1e-23 113.2 253 35.6
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.3e-23 112.8 221 36.7
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 2.1e-19 101.7 262 36.3
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.6e-17 93.2 268 32.5
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 4.9e-16 90.5 178 36.0
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 8.4e-16 89.7 91 53.8
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.3e-13 82.4 82 45.1
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.3e-13 81.6 97 47.4
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.3e-11 75.9 310 26.8
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 6.9e-10 70.1 88 43.2
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-08 65.5 66 53.0


User provided reference genes

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