Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 2.7e-100 368.6 178 100.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 8.3e-78 293.9 178 77.5
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 8.4e-70 267.3 178 72.5
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 6.9e-48 194.5 170 54.7
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-46 190.3 163 54.6
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 2.2e-46 189.5 155 58.7
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.4e-45 186.8 127 59.1
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.1e-45 184.5 174 50.0
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.1e-44 183.0 126 58.7
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.5e-44 182.2 124 61.3
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 6.0e-44 181.4 158 51.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 7.9e-44 181.0 129 59.7
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 5.1e-43 178.3 156 54.5
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 6.7e-43 177.9 124 59.7
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 8.7e-43 177.6 170 48.8
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.5e-42 176.8 123 61.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.5e-42 176.0 150 56.0
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.3e-42 175.6 136 58.8
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 9.6e-42 174.1 136 57.4
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.1e-41 172.9 130 57.7
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.1e-40 170.6 135 54.1
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.4e-40 170.2 124 58.9
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.4e-40 169.5 160 50.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 4.0e-40 168.7 177 45.2
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 4.0e-40 168.7 164 50.6
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 4.0e-40 168.7 161 48.4
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 5.3e-40 168.3 124 58.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 6.9e-40 167.9 190 45.3
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 9.0e-40 167.5 157 50.3
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.2e-39 167.2 125 60.0
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.0e-39 166.4 122 55.7
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.4e-39 165.6 123 55.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 3.4e-39 165.6 129 55.0
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.0e-38 164.1 142 50.7
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.0e-38 164.1 152 50.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.8e-38 162.2 122 55.7
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 4.9e-38 161.8 194 45.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 6.5e-38 161.4 125 54.4
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-37 160.6 156 49.4
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-37 160.6 155 47.1
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.1e-37 160.6 126 55.6
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.4e-37 160.2 155 47.1
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.5e-37 158.3 150 48.0
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.1e-36 156.4 153 49.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.1e-36 156.4 143 52.4
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 3.5e-36 155.6 131 51.9
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.5e-36 155.6 156 49.4
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-35 154.1 136 52.2
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-35 154.1 136 52.2
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-35 153.7 124 52.4
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.8e-35 153.3 122 57.4
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.8e-35 153.3 127 54.3
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.5e-34 149.4 165 44.8
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 5.7e-34 148.3 132 47.7
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 5.7e-34 148.3 126 50.8
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 7.4e-34 147.9 174 44.3
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-33 147.1 159 45.9
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.6e-33 146.7 136 50.0
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.8e-33 146.0 134 47.8
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.8e-33 146.0 188 40.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 3.7e-33 145.6 154 46.8
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 8.2e-33 144.4 133 48.9
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 8.2e-33 144.4 138 48.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 8.2e-33 144.4 185 42.2
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-32 144.1 135 45.9
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.8e-32 143.3 119 53.8
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.1e-32 142.5 160 42.5
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 4.1e-32 142.1 139 47.5
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.9e-32 141.4 124 47.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 6.9e-32 141.4 134 50.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 9.0e-32 141.0 117 53.0
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 1.2e-31 140.6 111 52.3
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.2e-31 140.6 123 48.8
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.5e-31 140.2 154 45.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.5e-31 140.2 102 58.8
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.5e-31 140.2 144 47.9
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 3.4e-31 139.0 103 56.3
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.4e-31 139.0 149 45.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 3.4e-31 139.0 131 45.8
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 4.5e-31 138.7 131 46.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 4.5e-31 138.7 131 46.6
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 4.5e-31 138.7 124 56.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.5e-31 138.7 144 47.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 5.9e-31 138.3 131 45.8
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 5.9e-31 138.3 131 45.8
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 7.6e-31 137.9 129 48.8
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.0e-30 137.5 133 48.1
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.0e-30 137.5 136 46.3
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.3e-30 137.1 132 46.2
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.3e-30 137.1 160 39.4
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.2e-30 136.3 135 45.2
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.8e-30 135.6 128 48.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.8e-30 135.6 135 44.4
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 5.0e-30 135.2 107 51.4
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.1e-29 134.0 113 49.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.4e-29 133.7 129 48.8
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.4e-29 133.7 102 53.9
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.5e-29 132.9 135 43.7
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.2e-29 132.5 130 46.2
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 5.5e-29 131.7 158 43.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 5.5e-29 131.7 105 50.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 7.2e-29 131.3 129 47.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 7.2e-29 131.3 97 54.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 9.3e-29 131.0 115 53.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.6e-28 130.2 169 40.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 2.1e-28 129.8 172 39.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 7.9e-28 127.9 162 40.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.0e-27 127.5 172 38.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.0e-27 127.5 106 53.8
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.0e-27 127.5 125 50.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.3e-27 127.1 158 38.6
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.3e-27 127.1 111 53.2
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.3e-27 127.1 140 47.1
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.8e-27 126.7 114 51.8
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 2.3e-27 126.3 110 53.6
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.9e-27 125.6 140 44.3
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.9e-27 125.6 107 50.5
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.9e-27 125.6 103 50.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.1e-27 125.2 112 47.3
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 6.7e-27 124.8 134 44.0
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 6.7e-27 124.8 102 51.0
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 8.8e-27 124.4 174 37.9
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.1e-26 124.0 164 39.0
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.5e-26 123.6 179 36.9
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 2.5e-26 122.9 140 41.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 4.3e-26 122.1 101 54.5
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 5.7e-26 121.7 144 42.4
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 7.4e-26 121.3 154 40.3
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.2e-25 119.8 98 51.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 4.8e-25 118.6 140 42.1
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 4.8e-25 118.6 154 42.2
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 4.8e-25 118.6 101 48.5
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-24 116.7 154 41.6
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.8e-24 116.7 87 59.8
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.4e-24 116.3 110 46.4
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.1e-24 115.9 159 40.9
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 4.1e-24 115.5 114 44.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 5.3e-24 115.2 127 44.1
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 5.3e-24 115.2 135 40.7
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 6.9e-24 114.8 96 50.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 6.9e-24 114.8 134 41.8
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 6.9e-24 114.8 134 41.8
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 6.9e-24 114.8 93 50.5
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 6.9e-24 114.8 134 41.8
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.9e-24 114.8 155 38.7
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.9e-24 114.8 111 45.9
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 9.1e-24 114.4 122 44.3
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.5e-23 113.6 93 49.5
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.5e-23 113.6 131 38.2
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.0e-23 113.2 95 48.4
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.6e-23 112.8 129 46.5
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.4e-23 112.5 127 40.9
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.5e-23 112.1 134 38.1
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.3e-22 110.5 126 42.1
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.8e-22 109.0 97 48.5
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 5.0e-22 108.6 114 43.9
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.0e-22 108.6 123 41.5
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 5.0e-22 108.6 100 47.0
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 6.5e-22 108.2 162 37.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 8.5e-22 107.8 130 40.8
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-21 107.5 127 40.2
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.5e-21 106.3 85 50.6
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.5e-21 106.3 132 43.2
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.2e-20 104.0 114 43.0
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.7e-20 102.8 82 51.2
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.1e-18 97.4 94 47.9
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.0e-18 96.7 161 33.5
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.8e-17 92.8 66 57.6
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.8e-17 92.8 98 41.8
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.8e-17 92.0 134 36.6
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 4.8e-17 92.0 119 41.2
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 3.1e-16 89.4 92 40.2
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.1e-16 89.0 147 34.7
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.2e-15 87.4 95 36.8
MELO3C035194.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.7e-12 76.3 64 57.8
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.3e-11 73.2 77 46.8
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 8.8e-11 71.2 59 49.2
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 1.3e-09 67.4 85 36.5
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.7e-09 67.0 85 34.1
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.1e-08 62.8 67 47.8
Mapoly0023s0104 Marchantia polymorpha HOM05D008739 ORTHO05D010871 7.0e-08 61.6 123 30.9
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 1.2e-07 60.8 70 40.0
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 2.6e-07 59.7 98 32.7
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 7.7e-07 58.2 90 35.6
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 7.7e-07 58.2 39 59.0
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 1.0e-06 57.8 105 32.4


User provided reference genes

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