Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 1.1e-50 203.0 104 100.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 5.3e-40 167.5 97 85.6
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 7.6e-39 163.7 100 84.0
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 1.9e-37 159.1 90 90.0
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.7e-28 128.6 99 71.7
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 1.0e-27 126.7 99 70.7
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-27 126.7 99 70.7
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-27 126.7 99 70.7
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.3e-27 125.6 99 70.7
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.3e-27 125.6 99 70.7
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 8.7e-27 123.6 94 66.0
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.7e-27 123.6 99 69.7
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 1.1e-26 123.2 99 62.6
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 2.5e-26 122.1 99 68.7
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 7.4e-26 120.6 103 67.0
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 2.1e-25 119.0 102 67.6
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 2.8e-25 118.6 105 63.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 3.7e-25 118.2 86 72.1
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 6.2e-25 117.5 100 66.0
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 8.2e-25 117.1 93 66.7
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 8.2e-25 117.1 98 65.3
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 8.2e-25 117.1 93 64.5
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 1.4e-24 116.3 105 61.9
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.8e-24 115.9 92 63.0
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 2.4e-24 115.5 97 64.9
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.4e-24 115.5 102 58.8
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 3.1e-24 115.2 95 67.4
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 5.3e-24 114.4 86 69.8
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 6.9e-24 114.0 90 67.8
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 9.0e-24 113.6 85 69.4
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.0e-24 113.6 103 63.1
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 9.0e-24 113.6 85 68.2
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 1.2e-23 113.2 88 68.2
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 4.5e-23 111.3 99 58.6
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 1.3e-22 109.8 93 60.2
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.3e-22 109.8 102 56.9
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 2.2e-22 109.0 88 62.5
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 5.0e-22 107.8 85 67.1
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 8.4e-22 107.1 96 60.4
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 8.4e-22 107.1 85 65.9
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 1.1e-21 106.7 89 64.0
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 1.4e-21 106.3 104 56.7
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 1.9e-21 105.9 94 60.6
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 1.9e-21 105.9 103 60.2
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 1.9e-21 105.9 93 57.0
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 5.5e-21 104.4 84 61.9
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 5.5e-21 104.4 104 55.8
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 1.2e-20 103.2 94 59.6
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.2e-20 103.2 101 54.5
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 2.1e-20 102.4 86 59.3
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 2.7e-20 102.1 94 56.4
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 2.7e-20 102.1 94 56.4
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 2.7e-20 102.1 90 62.2
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 4.6e-20 101.3 94 58.5
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 4.6e-20 101.3 106 61.3
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 6.1e-20 100.9 105 57.1
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 6.1e-20 100.9 88 62.5
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 1.0e-19 100.1 86 59.3
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.0e-19 100.1 86 59.3
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.8e-19 99.4 122 47.5
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.8e-19 99.4 89 64.0
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 2.3e-19 99.0 94 56.4
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.3e-19 99.0 86 59.3
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 2.3e-19 99.0 102 54.9
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 3.0e-19 98.6 94 56.4
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 3.9e-19 98.2 94 56.4
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 5.1e-19 97.8 94 54.3
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 6.7e-19 97.4 86 59.3
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 6.7e-19 97.4 86 57.0
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 1.1e-18 96.7 86 57.0
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 1.9e-18 95.9 90 56.7
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 1.9e-18 95.9 90 56.7
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 1.9e-18 95.9 84 57.1
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 3.3e-18 95.1 103 50.5
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 5.7e-18 94.4 104 51.9
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 5.7e-18 94.4 94 54.3
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 7.4e-18 94.0 88 56.8
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 7.4e-18 94.0 106 50.0
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 9.7e-18 93.6 100 55.0
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 1.6e-17 92.8 80 61.2
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 4.1e-16 88.2 104 51.0
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 7.7e-15 84.0 89 56.2
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 1.3e-14 83.2 76 53.9
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 2.9e-14 82.0 122 40.2
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.9e-13 79.3 38 100.0
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.9e-13 79.3 103 46.6
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 3.2e-13 78.6 68 55.9
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 4.2e-13 78.2 106 41.5
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 5.5e-13 77.8 53 66.0
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 5.5e-13 77.8 56 62.5
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 2.1e-12 75.9 91 48.4
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.1e-12 75.9 110 41.8
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 2.1e-12 75.9 106 40.6
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 2.7e-12 75.5 98 49.0
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 3.6e-12 75.1 50 70.0
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 7.9e-12 73.9 61 57.4
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 3.3e-10 68.6 85 43.5
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 3.3e-10 68.6 59 55.9
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 4.3e-10 68.2 53 64.2
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.8e-08 62.8 44 68.2
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 2.2e-06 55.8 53 47.2


User provided reference genes

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